PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG040735t1
Common NameTCM_040735
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family M-type_MADS
Protein Properties Length: 215aa    MW: 24088.7 Da    PI: 10.4504
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG040735t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF741.2e-231664149
                      S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
            SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                      k+i  k n qvtfskRr+g++KKA+EL++LC+++va+i+fs+ gk++ +
  Thecc1EG040735t1 16 KKIAKKNNLQVTFSKRRTGLFKKASELCTLCGVDVAIIVFSPAGKVFSF 64
                      678999****************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006623.983868IPR002100Transcription factor, MADS-box
SMARTSM004322.3E-32867IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.07E-27993IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-191030IPR002100Transcription factor, MADS-box
PfamPF003197.7E-261764IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-193045IPR002100Transcription factor, MADS-box
PRINTSPR004045.8E-194566IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MVQKNQNQGR QKIAMKKIAK KNNLQVTFSK RRTGLFKKAS ELCTLCGVDV AIIVFSPAGK  60
VFSFGHPQVE STIDRFLTRN PSLHVSNTHS LVEAHRNANI QELNVQLTRQ LEMLEVQKRK  120
GEALEEIREA GRRQCWWQAP TDVLGLNELK QLRIALEELN RNVKKQANKV LVESTNCWQF  180
LTANGIGGGV NNEANEMKAA SSVTQMYNLG QGLF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015089.21e-156PREDICTED: agamous-like MADS-box protein AGL62
TrEMBLA0A061GTJ81e-156A0A061GTJ8_THECC; Agamous-like MADS-box protein A, putative
STRINGEOY327081e-157(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.17e-48AGAMOUS-like 62
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]