PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG040889t1

Common Name

TCM_040889

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HSF

Protein Properties

Length: 280aa MW: 32366.4 Da PI: 8.8214

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040889t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	113	2e-35	25	116	2	102
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d+ +++++sw e+++sfvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv ++ weF++++F+kg k+ll Thecc1EG040889t1 25 FLSKTYQLVDDPLTDHIVSWGEDETSFVVWRPPEFARDLLPSYFKHNNFSSFVRQLNTYGFKKVVADR---------WEFANEYFRKGAKHLL 108 9**************************************************************999.........************ PP XXXXXXXX CS HSF_DNA-bind 95 ekikrkks 102 ++i+r+k+ Thecc1EG040889t1 109 SEIHRRKT 116 ****97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.10	4.1E-38	16	108	IPR011991	Winged helix-turn-helix DNA-binding domain
SMART	SM00415	2.5E-57	21	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
SuperFamily	SSF46785	6.8E-33	22	114	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF00447	2.3E-31	25	114	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-19	25	48	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-19	63	75	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PROSITE pattern	PS00434	0	64	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding
PRINTS	PR00056	4.6E-19	76	88	IPR000232	Heat shock factor (HSF)-type, DNA-binding

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0042802	Molecular Function	identical protein binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 280 aa Download sequence Send to blast
MAFTVERSEE LVFSVESQKA VPAPFLSKTY QLVDDPLTDH IVSWGEDETS FVVWRPPEFA 60 RDLLPSYFKH NNFSSFVRQL NTYGFKKVVA DRWEFANEYF RKGAKHLLSE IHRRKTPQNH 120 QQYHHEQQTQ FLKPEEGFGW IESPSPSPKA SADVLTALTQ DNQRLRRKNY MLVSELTHMK 180 NLYNDIIYFI QNHVKPVPYQ QKAYNLGTKI REFGPSFQDP IHSGNENATS SVLGKSSMTL 240 TEEPNNTVKL FGVPLSGRKR LHPEKINQQE YLRCGVSTD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5d5u_B	2e-21	21	116	26	131	Heat shock factor protein 1
5d5v_B	2e-21	21	116	26	131	Heat shock factor protein 1
5d5v_D	2e-21	21	116	26	131	Heat shock factor protein 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015249.2	0.0	PREDICTED: heat stress transcription factor B-4
Swissprot	Q9C635	6e-88	HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBL	A0A061GTY1	0.0	A0A061GTY1_THECC; Heat shock transcription factor B4
STRING	EOY32868	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2900	28	66

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	3e-90	heat shock transcription factor B4

Link Out ? help Back to Top
Phytozome	Thecc1EG040889t1
Entrez Gene	18589965

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]