PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG040941t4

Common Name

TCM_040941

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SRS

Protein Properties

Length: 255aa MW: 26784.7 Da PI: 9.8358

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG040941t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	144.4	9.4e-45	134	255	4	118
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaes 96 +++CqdCGnqakkdC+h+RCRtCCksrgfdC thvkstWv+aa+rrerq + aaa++ a +s +++ +k++r +++++++s+t++s++++ Thecc1EG040941t4 134 SGTTCQDCGNQAKKDCTHRRCRTCCKSRGFDCPTHVKSTWVSAARRRERQLMVAAATAGAGSSGSTSGAKKPRLI-TSQTTTTSHTSTSNTTP 225 5679*******************************************************999****986.88899999***** PP DUF702 97 kkeletss........lPeevsseavfrcv 118 +++++tss lP +v+++avf+cv Thecc1EG040941t4 226 PRSFDTSSshqgfkesLPGQVRAPAVFKCV 255 **999******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	1.7E-38	135	255	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	4.9E-27	137	179	IPR006510	Zinc finger, lateral root primordium type 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009733	Biological Process	response to auxin
GO:0048364	Biological Process	root development
GO:0042803	Molecular Function	protein homodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 255 aa Download sequence Send to blast
MGMVGLRDVF VVAPASSFNH HHHHHHHHTQ DPIMANDQIN GQNAATALGV GVIPLLTATP 60 CLASQNVEDS DLLSNNGRNK LSGMQLWQNQ NSSSHYLKKP SSVPDNNNSS SMNLIQSSGG 120 GGMGGGSGGS GSSSGTTCQD CGNQAKKDCT HRRCRTCCKS RGFDCPTHVK STWVSAARRR 180 ERQLMVAAAT AGAGSSGSTS GAKKPRLITS QTTTTSHTST SNTTPPRSFD TSSSHQGFKE 240 SLPGQVRAPA VFKCV

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015295.2	1e-129	PREDICTED: protein LATERAL ROOT PRIMORDIUM 1
Swissprot	Q94CK9	1e-57	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A061GSS5	0.0	A0A061GSS5_THECC; Lateral root primordium protein-related isoform 4 (Fragment)
STRING	EOY32912	1e-134	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	1e-48	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Thecc1EG040941t4
Entrez Gene	18589994

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]