PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041051t1

Common Name

TCM_041051

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YC

Protein Properties

Length: 225aa MW: 25614.8 Da PI: 10.0188

Description

NF-YC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041051t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YC	41	4.1e-13	116	206	9	99
NF-YC 9 qiekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivprd 99 + e++++ k ++P+ rik+i+k+++ i ++ l+ ka e f+ ++ + + + ++++l ++++v + +dfl d vp++ Thecc1EG041051t1 116 EEEEEEEAKMCRFPMNRIKRIMKSEDSRVAIPQDVVFLVNKATEKFLEQFCEDGYKSSVKDRKKSLSYKHLSTVVHERRRYDFLSDYVPEK 206 5688889999******************************************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF00808	1.2E-14	127	190	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
Gene3D	G3DSA:1.10.20.10	3.3E-20	128	205	IPR009072	Histone-fold
SuperFamily	SSF47113	1.64E-15	137	206	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 225 aa Download sequence Send to blast
MASSKKPTEE ENKKKKKKSN SSPAKETKTA LKKPDKKAST TEKANKSKPK PKPKPKPDSN 60 KNKSSNGTLV ESEVIAVPSS STDTKEQEDE NKTNKNVKSN KRKQKEKVEE NEGEEEEEEE 120 EEAKMCRFPM NRIKRIMKSE DSRVAIPQDV VFLVNKATEK FLEQFCEDGY KSSVKDRKKS 180 LSYKHLSTVV HERRRYDFLS DYVPEKIKAE DALKERNLTE TGAG*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015427.2	1e-116	PREDICTED: DNA polymerase epsilon subunit C
TrEMBL	A0A061GU64	1e-156	A0A061GU64_THECC; Nuclear factor Y, putative
STRING	EOY33046	1e-157	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11190	22	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07980.1	2e-37	nuclear factor Y, subunit C10

Link Out ? help Back to Top
Phytozome	Thecc1EG041051t1
Entrez Gene	18590069

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]