PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041094t1

Common Name

TCM_041094

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 218aa MW: 23467.6 Da PI: 5.2087

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041094t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	136.7	8.2e-43	55	154	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 +CaaCk+lrr+Ca++Cvlapyfp ++p+kf ++h++FGasn++k+l++lpe++r da+ss+vyeA ar+rdPvyG++g i +lq+q+++l+a+ Thecc1EG041094t1 55 PCAACKILRRRCADKCVLAPYFPPTEPAKFTIAHRVFGASNIIKFLQELPESQRADAVSSMVYEASARIRDPVYGCAGAICQLQKQVNELQAQ 147 7****************************************************************************************** PP DUF260 94 lallkee 100 la++++e Thecc1EG041094t1 148 LAKAQAE 154 99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	26.134	54	155	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	5.2E-43	55	152	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 218 aa Download sequence Send to blast
MFKMEYTEAT PPPPPTTTTT TSSPQSLSPN SSNSSSSPPP PPPTTTSTPP VVISPCAACK 60 ILRRRCADKC VLAPYFPPTE PAKFTIAHRV FGASNIIKFL QELPESQRAD AVSSMVYEAS 120 ARIRDPVYGC AGAICQLQKQ VNELQAQLAK AQAEVVNMQL QQANLVALLC VEMAQSPQPN 180 SQQSVDTFIS SPPSYQSNPG FLEDNNNLGS LWEPLWT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	1e-42	48	157	4	113	LOB family transfactor Ramosa2.1
5ly0_B	1e-42	48	157	4	113	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015486.2	1e-124	PREDICTED: LOB domain-containing protein 1
Swissprot	Q9SK08	3e-79	LBD11_ARATH; LOB domain-containing protein 11
TrEMBL	A0A061GTD1	1e-155	A0A061GTD1_THECC; LOB domain-containing protein 1
STRING	EOY33105	1e-156	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1141	28	105

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G28500.1	7e-73	LOB domain-containing protein 11

Link Out ? help Back to Top
Phytozome	Thecc1EG041094t1
Entrez Gene	18590099

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]