PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041141t1

Common Name

TCM_041141

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

FAR1

Protein Properties

Length: 659aa MW: 75372.3 Da PI: 7.7975

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041141t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	66.7	5.9e-21	63	156	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHel 89 +fY+e+Ak++GFs+r+++++ + + t+r fvC + g++ +++++ k +r+r+++r+gC+a l+++k + ++w+vt ++++HnHel Thecc1EG041141t1 63 EFYSEFAKRCGFSIRRHRTEGKdGVGKGLTRRYFVCHRAGNTPLKTSNDGKPQRNRKSSRCGCQAYLRISKVTdlgPAEWRVTGFVNHHNHEL 155 6************9998877356667999*************9******************9977779************9 PP FAR1 90 a 90 Thecc1EG041141t1 156 L 156 6 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.5E-17	63	156	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-18	257	348	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.73	535	568	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.7E-7	538	566	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	4.2E-6	543	570	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 659 aa Download sequence Send to blast
MMSEDAGQML VVYDDPSDQR SLSLDETSST EESPDETRLS LETTDDAIPY IGQRFATHDA 60 AYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPLKTSN DGKPQRNRKS 120 SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM 180 FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDQEDESI DLLRMCKNIK 240 EKDSNFKFDH MISLCAVVFD TTHRLTAFDM PLGIWVGMNN YGMPCFFGCV LLREENLRSL 300 SWALKAFLGF MDGKAPQTIL TDQNMCLKEA IAIEMPTTKY ALCIWMIVAK FPSWFNAVLG 360 EHYNEWKAEF YRLYNLESIE DFELGWKDMV NSFGLHTNRH IANLFALRSL WALPYLRSHF 420 FAGMTTTGHS KAINAFIQRF LSAQTRLAHF VEQVAVAVDF KDQAAEQQTM QQNLQNICLK 480 TGAPMESHAA SILTPFAFSK LQEQLVLAAH YASFQMDDGF LVRHHTKLEG GRKVYWVPQE 540 GIISCSCHQF EFSGILCRHA LRVLSTGNCF QIPERYLPLR WRRFCTSPAK LLHSSPTDQT 600 ERIQLLQSMV SSLVAESAKS KERLDIATEQ VSILLSRIRE QPVTSQGVRD ISPIHRNL*

Sequence ? help Back to Top

Protein Sequence Length: 659 aa Download sequence Send to blast

MMSEDAGQML VVYDDPSDQR SLSLDETSST EESPDETRLS LETTDDAIPY IGQRFATHDA  60
AYEFYSEFAK RCGFSIRRHR TEGKDGVGKG LTRRYFVCHR AGNTPLKTSN DGKPQRNRKS  120
SRCGCQAYLR ISKVTDLGPA EWRVTGFVNH HNHELLEPNQ VRFLPAYRTI SDTDKSRILM  180
FAKTGISVQQ MMRLMELEKC VEPGYLPFTE KDVRNLLQSF RKLDQEDESI DLLRMCKNIK  240
EKDSNFKFDH MISLCAVVFD TTHRLTAFDM PLGIWVGMNN YGMPCFFGCV LLREENLRSL  300
SWALKAFLGF MDGKAPQTIL TDQNMCLKEA IAIEMPTTKY ALCIWMIVAK FPSWFNAVLG  360
EHYNEWKAEF YRLYNLESIE DFELGWKDMV NSFGLHTNRH IANLFALRSL WALPYLRSHF  420
FAGMTTTGHS KAINAFIQRF LSAQTRLAHF VEQVAVAVDF KDQAAEQQTM QQNLQNICLK  480
TGAPMESHAA SILTPFAFSK LQEQLVLAAH YASFQMDDGF LVRHHTKLEG GRKVYWVPQE  540
GIISCSCHQF EFSGILCRHA LRVLSTGNCF QIPERYLPLR WRRFCTSPAK LLHSSPTDQT  600
ERIQLLQSMV SSLVAESAKS KERLDIATEQ VSILLSRIRE QPVTSQGVRD ISPIHRNL*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017982907.1	0.0	PREDICTED: protein FAR1-RELATED SEQUENCE 11
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A061GZJ8	0.0	A0A061GZJ8_THECC; FAR1-related sequence 11
STRING	EOY33159	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1765	26	74

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Thecc1EG041141t1
Entrez Gene	18590134

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]