PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041160t1
Common NameTCM_041160
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 246aa    MW: 27965.4 Da    PI: 7.4191
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041160t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.11.8e-122673247
                      SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding  2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                       rWT  Ed+l+ +a  +l+ g   +W +Ia++++ g+++k++k+++ ++
  Thecc1EG041160t1 26 SRWTRLEDKLFEQALVMLPEGipdRWQKIAERVP-GKSAKEVKEHYEML 73
                      69********************************.***********887 PP
2Myb_DNA-binding47.15.4e-15127171347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE++l++ + +++G+g+W++I+r +  +Rt+ q+ s+ qky
  Thecc1EG041160t1 127 PWTEEEHKLFLIGLHKFGKGDWRSISRNVVVTRTPTQVASHAQKY 171
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-62273IPR009057Homeodomain-like
SuperFamilySSF466896.96E-122275IPR009057Homeodomain-like
PROSITE profilePS512937.9732378IPR017884SANT domain
SMARTSM007172.6E-92476IPR001005SANT/Myb domain
PfamPF002492.9E-112674IPR001005SANT/Myb domain
CDDcd001673.88E-102774No hitNo description
PROSITE profilePS5129421.472120176IPR017930Myb domain
SuperFamilySSF466895.6E-17122177IPR009057Homeodomain-like
TIGRFAMsTIGR015575.3E-17123175IPR006447Myb domain, plants
SMARTSM007173.4E-11124174IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.4E-11124170IPR009057Homeodomain-like
CDDcd001676.19E-10127172No hitNo description
PfamPF002494.4E-13127171IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MYHDNSSINH NPFLTQPQPS TQVLTSRWTR LEDKLFEQAL VMLPEGIPDR WQKIAERVPG  60
KSAKEVKEHY EMLLYDVYEI DAGRIEIPSY ADDSSLLSSS WDSDTQISFE ASKPKQHGEN  120
ERKKGTPWTE EEHKLFLIGL HKFGKGDWRS ISRNVVVTRT PTQVASHAQK YFLRQSSVKK  180
ERKRSSIHDI TTVDSNTMDA PVDQNWIPVL GGPVQQVPVR HQLPPGSHLP AQGGSLGYQN  240
YSYPM*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00055PBMTransfer from AT5G04760Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982962.10.0PREDICTED: transcription factor DIVARICATA
SwissprotQ8S9H71e-58DIV_ANTMA; Transcription factor DIVARICATA
TrEMBLA0A061GZK50.0A0A061GZK5_THECC; Duplicated homeodomain-like superfamily protein isoform 1
STRINGEOY331930.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51272750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-81MYB family protein
Publications ? help Back to Top
  1. Galego L,Almeida J
    Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers.
    Genes Dev., 2002. 16(7): p. 880-91
    [PMID:11937495]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Almeida J,Rocheta M,Galego L
    Genetic control of flower shape in Antirrhinum majus.
    Development, 1997. 124(7): p. 1387-92
    [PMID:9118809]