PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041175t1
Common NameTCM_041175
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family YABBY
Protein Properties Length: 183aa    MW: 20357 Da    PI: 8.2262
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041175t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY231.81.6e-7121572170
             YABBY   2 dvfssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesast 94 
                       +++ sse+vCyv+CnfCntilavsvP tslf++vtvrCGhC++llsvn+ ++ q+++ ++      ke++  ++ ++++++      ++s+ +
  Thecc1EG041175t1   2 SLDLSSERVCYVHCNFCNTILAVSVPCTSLFNIVTVRCGHCANLLSVNMGTSLQTVPIQDA----QKEQINTDQDHSNKECG-----SSSKCN 85 
                       56789****************************************************9996....33333333333332222.....222223 PP

             YABBY  95 svsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                       + s+    ++ ++e+pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aaknWahfP+ihfgl
  Thecc1EG041175t1  86 KFSA---FDSAEHEAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFGL 157
                       3333...3567899***999.9****************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.8E-756157IPR006780YABBY protein
SuperFamilySSF470951.96E-8101150IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.5E-5105151IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 183 aa     Download sequence    Send to blast
MSLDLSSERV CYVHCNFCNT ILAVSVPCTS LFNIVTVRCG HCANLLSVNM GTSLQTVPIQ  60
DAQKEQINTD QDHSNKECGS SSKCNKFSAF DSAEHEAPRM PPIRPPEKRQ RVPSAYNRFI  120
KEEIQRIKAS NPDISHREAF STAAKNWAHF PHIHFGLKLD GNKQAKLDQA FAEGTQKSTG  180
FY*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015607.11e-136PREDICTED: putative axial regulator YABBY 2
SwissprotQ9XFB03e-85YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A061GUT11e-135A0A061GUT1_THECC; Plant-specific transcription factor YABBY family protein isoform 1
STRINGEOY332261e-136(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55812749
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.11e-87YABBY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]