PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041175t2
Common NameTCM_041175
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family YABBY
Protein Properties Length: 142aa    MW: 15828.8 Da    PI: 10.0254
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041175t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY114.12.5e-35119773159
             YABBY  73 eelkveeenlksnvekeesastsvsse.klsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaakn 159
                       ++ ++e+ n+++ ++++e+ s+s+ ++ +  ++ ++e+pr+pp irPPekrqrvPsaynrfikeeiqrikasnPdishreafs+aakn
  Thecc1EG041175t2  11 QDAQKEQINTDQDHSNKECGSSSKCNKfSAFDSAEHEAPRMPP-IRPPEKRQRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKN 97 
                       5666667777777777777666655530346788999***999.9******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046901.2E-32397IPR006780YABBY protein
SuperFamilySSF470957.85E-75295IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
GO:0010158Biological Processabaxial cell fate specification
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MGTSLQTVPI QDAQKEQINT DQDHSNKECG SSSKCNKFSA FDSAEHEAPR MPPIRPPEKR  60
QRVPSAYNRF IKEEIQRIKA SNPDISHREA FSTAAKNVMG TFSSHSLWPK AGWQQASKTG  120
PGICRGYSKV YWVLLKHNGN L*
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2276444e-56CU227644.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015607.12e-65PREDICTED: putative axial regulator YABBY 2
SwissprotQ9XFB06e-32YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A061GVQ01e-102A0A061GVQ0_THECC; Plant-specific transcription factor YABBY family protein isoform 2
STRINGEOY332267e-65(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.12e-34YABBY family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]