PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041362t1
Common NameTCM_041362
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 213aa    MW: 24522.3 Da    PI: 6.642
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041362t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-081156346
                      SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46
                      +W+   d+l+ +a  +++ +   +W++Ia+ ++ g+++ +++ ++ +
  Thecc1EG041362t1 11 SWSWHQDKLFERALIMFPEDspdRWEKIAAQLP-GKSAMEVRKHYAD 56
                      7********************************.**********965 PP
2Myb_DNA-binding445e-14109153347
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       +WT+eE+ l++ + +++G+g+W++I+r     Rt+ q+ s+ qky
  Thecc1EG041362t1 109 PWTEEEHRLFLIGLQKYGKGDWRSISRNAVVSRTPTQVASHAQKY 153
                       8*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512936.315761IPR017884SANT domain
SMARTSM007173.2E-8860IPR001005SANT/Myb domain
SuperFamilySSF466894.09E-111066IPR009057Homeodomain-like
CDDcd001672.23E-61154No hitNo description
PfamPF002497.2E-71156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.6E-41255IPR009057Homeodomain-like
PROSITE profilePS5129419.214102158IPR017930Myb domain
SuperFamilySSF466893.81E-17104159IPR009057Homeodomain-like
TIGRFAMsTIGR015571.1E-17106156IPR006447Myb domain, plants
SMARTSM007172.3E-10106156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.4E-12106152IPR009057Homeodomain-like
CDDcd001671.32E-8109154No hitNo description
PfamPF002491.2E-11109153IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MIRSNNDSPS SWSWHQDKLF ERALIMFPED SPDRWEKIAA QLPGKSAMEV RKHYADLEHD  60
VMEIESGRVQ MPSYEGELES ASWVNESGGS QGWVGWKKDR ESERRKGVPW TEEEHRLFLI  120
GLQKYGKGDW RSISRNAVVS RTPTQVASHA QKYFLRLNSI TKKDKKRSSI HDITMADDIT  180
NQNGVGTMGD HSSIELMDQS KFFNEQGRSF WE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-14474373RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015770.21e-154PREDICTED: transcription factor DIVARICATA
SwissprotQ9FNN69e-56SRM1_ARATH; Transcription factor SRM1
TrEMBLA0A061GZP41e-155A0A061GZP4_THECC; Duplicated homeodomain-like superfamily protein, putative
STRINGEOY333891e-156(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2056656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G04760.12e-65MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Wang T, et al.
    Salt-Related MYB1 Coordinates Abscisic Acid Biosynthesis and Signaling during Salt Stress in Arabidopsis.
    Plant Physiol., 2015. 169(2): p. 1027-41
    [PMID:26243618]
  3. Chen YS, et al.
    Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis.
    Plant Mol. Biol., 2017. 93(3): p. 299-311
    [PMID:27866313]