PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041364t1

Common Name

TCM_041364

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NAC

Protein Properties

Length: 243aa MW: 27758.1 Da PI: 6.4056

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041364t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	151.6	3.7e-47	4	134	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 + GfrF Pt+eelv++yL++++egk+ e+++vi+ ++iy+vePwdLp+ +ka++++w++F++r++k+a+g r+nr+t+sgyWkatg+ Thecc1EG041364t1 4 ATGFRFFPTEEELVSFYLHNQLEGKRQEMHHVIPVLNIYDVEPWDLPQlageVCKADTEQWFYFTPRQEKEARGGRPNRTTASGYWKATGSPS 96 58*************************999**********9657765566888****************************** PP NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 v+s++++++g+kkt+vfykg+ap+g+kt+W m+eyr+ Thecc1EG041364t1 97 YVYSSDNQVIGMKKTMVFYKGKAPSGRKTKWKMNEYRA 134 **********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	47.666	3	161	IPR003441	NAC domain
SuperFamily	SSF101941	2.48E-48	3	160	IPR003441	NAC domain
Pfam	PF02365	7.6E-23	5	133	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 243 aa Download sequence Send to blast
MEVATGFRFF PTEEELVSFY LHNQLEGKRQ EMHHVIPVLN IYDVEPWDLP QLAGEVCKAD 60 TEQWFYFTPR QEKEARGGRP NRTTASGYWK ATGSPSYVYS SDNQVIGMKK TMVFYKGKAP 120 SGRKTKWKMN EYRAIEAVAN PSAAATRKLR HEFSLCRVYV VSGSLRAFDR RPLETVPRGT 180 QLHDNRTTIS SERPTMMEIS SSGTSPSGGN HSELQDSSED DIWEMVNDLE EHPLVWEQVN 240 WT*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-34	1	159	15	163	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-34	1	159	15	163	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-34	1	159	15	163	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-34	1	159	15	163	NO APICAL MERISTEM PROTEIN
3swm_A	2e-34	1	159	18	166	NAC domain-containing protein 19
3swm_B	2e-34	1	159	18	166	NAC domain-containing protein 19
3swm_C	2e-34	1	159	18	166	NAC domain-containing protein 19
3swm_D	2e-34	1	159	18	166	NAC domain-containing protein 19
3swp_A	2e-34	1	159	18	166	NAC domain-containing protein 19
3swp_B	2e-34	1	159	18	166	NAC domain-containing protein 19
3swp_C	2e-34	1	159	18	166	NAC domain-containing protein 19
3swp_D	2e-34	1	159	18	166	NAC domain-containing protein 19
4dul_A	2e-34	1	159	15	163	NAC domain-containing protein 19
4dul_B	2e-34	1	159	15	163	NAC domain-containing protein 19
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015771.2	0.0	PREDICTED: NAC domain-containing protein 90
Swissprot	Q9FMR3	1e-88	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A061GU56	0.0	A0A061GU56_THECC; NAC domain protein, IPR003441
STRING	EOY33390	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1445	28	93

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G22380.1	6e-91	NAC domain containing protein 90

Link Out ? help Back to Top
Phytozome	Thecc1EG041364t1
Entrez Gene	18590282

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]