PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041398t1

Common Name

TCM_041398

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

NF-YB

Protein Properties

Length: 162aa MW: 18231.2 Da PI: 4.7967

Description

NF-YB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041398t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NF-YB	45.5	1.8e-14	9	102	6	94
NF-YB 6 rflPianvsrimkkvlPa.....nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrel 93 ++lP a v r++k l + + kda e + fi ++++ a+d c++ +r+tin++d++ al ++ f ++v+pl++ l+++r Thecc1EG041398t1 9 EELPKAIVRRVVKDKLSDcspdyDINVHKDALLAFTESARIFIHYLSATANDICKESRRQTINAEDVFKALEEIEFSEFVKPLRASLAEFRRK 101 5799999***9999652222256899************************************************************986 PP NF-YB 94 e 94 + Thecc1EG041398t1 102 N 102 5 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.20.10	5.0E-32	7	156	IPR009072	Histone-fold
Pfam	PF00808	1.1E-10	10	79	IPR003958	Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamily	SSF47113	2.92E-23	11	152	IPR009072	Histone-fold

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0046982	Molecular Function	protein heterodimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 162 aa Download sequence Send to blast
MEKAVPEAEE LPKAIVRRVV KDKLSDCSPD YDINVHKDAL LAFTESARIF IHYLSATAND 60 ICKESRRQTI NAEDVFKALE EIEFSEFVKP LRASLAEFRR KNAGKKGGAT KEKEVKKKRK 120 VEEPSGKSGS KSKQNKGEDD NEEEREEGEE EAEEDENNGN E*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	98	119	RRKNAGKKGGATKEKEVKKKRK
2	110	119	KEKEVKKKRK
3	115	120	KKKRKV

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007015804.2	1e-111	PREDICTED: DNA polymerase epsilon subunit 3
TrEMBL	A0A061GVH6	1e-110	A0A061GVH6_THECC; Nuclear factor Y
STRING	EOY33423	1e-111	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM12007	24	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27470.1	1e-46	nuclear factor Y, subunit B11

Link Out ? help Back to Top
Phytozome	Thecc1EG041398t1
Entrez Gene	18590310

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]