PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041493t1
Common NameTCM_041493
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ERF
Protein Properties Length: 278aa    MW: 30344.1 Da    PI: 6.1721
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041493t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2552e-1752102155
               AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       + ++GVr++k  ++Wv+e+r+p++   + r++lg+f  +e+Aa+a++ a+++l+g
  Thecc1EG041493t1  52 PVFRGVRQRK-GNKWVCEVREPYK---KSRIWLGTFPIPEMAARAYDVAALALRG 102
                       579******9.9*********765...6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.2E-1252102IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-2953112IPR001471AP2/ERF domain
PROSITE profilePS5103221.70753110IPR001471AP2/ERF domain
SMARTSM003808.0E-2853116IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-2053112IPR016177DNA-binding domain
PRINTSPR003672.4E-105465IPR001471AP2/ERF domain
CDDcd000183.74E-2954112No hitNo description
PRINTSPR003672.4E-1092112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MEHLELDSSS PSSSSSSCKS GSPDSESSSA EALPVSHKRK AGRKKFKETR HPVFRGVRQR  60
KGNKWVCEVR EPYKKSRIWL GTFPIPEMAA RAYDVAALAL RGKSAALNFP DSASVLPRAK  120
SSSAKDIQRA ALAAAEAFRP AAHCTSSASA ISLSLDISSH TTSSRTIEPE CSSSQISNAT  180
NQDKVLEPCL VEIKPIDQNE EKKVLDHSLM DHMPSSETLE NKPNQSNPLF VDEEALFNLP  240
GLLDSMAEGM LLTPPAMQRQ VDWDDDTAFT MNIDLWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-13511101272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007015927.20.0PREDICTED: dehydration-responsive element-binding protein 1F
TrEMBLA0A061GVL60.0A0A061GVL6_THECC; C-repeat/DRE binding factor 1, putative
STRINGEOY335460.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2219245
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25490.12e-33C-repeat/DRE binding factor 1
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]