PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041581t1

Common Name

TCM_041581

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GeBP

Protein Properties

Length: 230aa MW: 26505.8 Da PI: 10.9988

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041581t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	54.2	4.2e-17	14	104	3	98
DUF573 3 fqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskki 95 + r++se+Dei +L+ li +++ + ++ ++ + k+++ k++ sq+ +K+rrL+ K++k+ + + ++++hd+ if+lsk+i Thecc1EG041581t1 14 SARVFSESDEIQILKCLIRATKSIPPPITTVGTRTINRIIKRLNYKFTPSQINDKVRRLRLKYHKHARS-----KSLVRTHHDRRIFKLSKRI 101 689*************99777776556667889999999********************9999.....6678999********** PP DUF573 96 Wgs 98 Wg+ Thecc1EG041581t1 102 WGK 104 *95 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	8.6E-17	15	103	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 230 aa Download sequence Send to blast
MATSPPSTTP NGRSARVFSE SDEIQILKCL IRATKSIPPP ITTVGTRTIN RIIKRLNYKF 60 TPSQINDKVR RLRLKYHKHA RSKSLVRTHH DRRIFKLSKR IWGKKISATN NEKVEEEMGS 120 GERNWVRSLE KFPYLVAEFS RVLPENEVWK ERMKGLEEEK LRKMDQEWIF IKVEEAKLVA 180 KKADLMQQQI MEIMGETVSA NGVSSPFFQG GSSFRIQTRK KGFTLTPSA*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_017984018.1	1e-148	PREDICTED: uncharacterized protein LOC18590459
TrEMBL	A0A061GV42	1e-167	A0A061GV42_THECC; Uncharacterized protein
STRING	EOY33675	1e-168	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17149	8	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G61730.1	6e-09	DNA-binding storekeeper protein-related transcriptional regulator

Link Out ? help Back to Top
Phytozome	Thecc1EG041581t1
Entrez Gene	18590459

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]