PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041776t1
Common NameTCM_041776
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family C2H2
Protein Properties Length: 198aa    MW: 21502.7 Da    PI: 5.6855
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041776t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.30.000122749123
                      EEETTTTEEESSHHHHHHHHHHT CS
           zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                      y+C+ C++ Fs+   L  H++ H
  Thecc1EG041776t1 27 YECTFCKRGFSNAQALGGHMNIH 49
                      99*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.3E-52453IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576678.1E-72554No hitNo description
PROSITE profilePS5015711.5722754IPR007087Zinc finger, C2H2
SMARTSM003550.00992749IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002802949IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 198 aa     Download sequence    Send to blast
METDQSAPEN PDQGSSDEQR TSPARSYECT FCKRGFSNAQ ALGGHMNIHR RDKAKLKQAS  60
SPGETTQQSL DIVPKIIPSS YSPNHPSCTT VLLPIADAKS SQEIRSSPGK WPWVIPEEDD  120
ANKRDKTHVG EIRQLPLFDE KPSTTDQNYP SSQAQGGIGK GMSSSQGSSG LDQLDLELRL  180
GPEPPDSSPT MTTKKFF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021279247.11e-126probable transcriptional regulator RABBIT EARS
TrEMBLA0A061H0061e-143A0A061H006_THECC; Transcriptional regulator SUPERMAN, putative
STRINGEOY339491e-144(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69912341
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53820.17e-18C2H2 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]