PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041812t1
Common NameTCM_041812
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 691aa    MW: 78589.8 Da    PI: 6.5675
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041812t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS350.42.9e-1073176863374
              GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfsh 95 
                       +lL +cA+av+  d+++a++lL +++ ++sp gd ++Rla+yf+++L+ rl++++  ly  +p + t     s+ ++a+ l++ ++P+ ++s+
  Thecc1EG041812t1 317 SLLNQCAQAVAIYDQRAATELLGKIRRHSSPFGDGTERLAHYFANGLEVRLNGTGAPLYTPIPRNGTL---ASDIIKAYILYVSACPFRRISN 406
                       79***************************************************999999887777666...9********************* PP

              GRAS  96 ltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                       l aN+ I + +e++++vH iDf+is+G+QWp+L+q L++R++gpp+lRi g++ p++g   +e++e+tg+rL++ +e+++vpfe+n  +akr+
  Thecc1EG041812t1 407 LFANRNIAKLAEKATTVHLIDFGISYGFQWPCLIQRLSTRRGGPPKLRISGIDFPQPGlrPAERIEATGRRLRRCCENVDVPFEYNS-IAKRW 498
                       ***********************************************************9***************************.7**** PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres 279
                       e +++e+L+++++E ++Vn++++l +l+d+sv l+s+r+ vLkl+k+++P+++++   + ++n + F++rf ea+ ++sa+fd lea++pre+
  Thecc1EG041812t1 499 EFVRVEDLKIERDELIVVNCMYRLRNLPDDSVVLNSPRNIVLKLIKRINPDLFIHGVVNGSYNVPFFVTRFREAFFHFSAMFDILEANVPRED 591
                       ********************************************************************************************* PP

              GRAS 280 eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSa 372
                        +r  +Ere++gr+++nv+a eg er+ r et+++W+ r ++aGF+++pl+ek+ + a+++++  + + + +e + +++++gWk+r + ++S+
  Thecc1EG041812t1 592 PDRLLLEREMFGRDAMNVIAYEGLERIDRPETYKQWQFRNQKAGFRQLPLDEKILNRARTVMKSNYHEDFAIEVDCQWILQGWKGRVIHALSC 684
                       ******************************************************************999************************ PP

              GRAS 373 Wr 374
                       W+
  Thecc1EG041812t1 685 WK 686
                       *8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098561.964289666IPR005202Transcription factor GRAS
PfamPF035149.9E-105317686IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 691 aa     Download sequence    Send to blast
MDTLLPNNGS EVVFLNQNPV NGSNPNNILV DPAKSNHPGH VASSVGSNSS DGDSPYGSDN  60
LDFSNAVLKF INDVLMEEDV EGRPCMLQDC LALQAAEKSF YDVQVQKYPP LPDHFYQEVD  120
VDNECPYDPL ICSNRADGND SQAAANNMVE SSWNYHQHGL DSPLMQSSSN YSTELTSFLP  180
RLCGEILRSE PVESYTFKLP ELQKGVAGRE AEKEVWKHIS NRSMGRKNHP REFEDSLEGR  240
RNSKQFALIT EEDSSEEHMF DEVFLVKGGN VSCPLYEALQ NRANRKLQDN GQVKADSGRK  300
SRVKKQGNGK EMVDLWSLLN QCAQAVAIYD QRAATELLGK IRRHSSPFGD GTERLAHYFA  360
NGLEVRLNGT GAPLYTPIPR NGTLASDIIK AYILYVSACP FRRISNLFAN RNIAKLAEKA  420
TTVHLIDFGI SYGFQWPCLI QRLSTRRGGP PKLRISGIDF PQPGLRPAER IEATGRRLRR  480
CCENVDVPFE YNSIAKRWEF VRVEDLKIER DELIVVNCMY RLRNLPDDSV VLNSPRNIVL  540
KLIKRINPDL FIHGVVNGSY NVPFFVTRFR EAFFHFSAMF DILEANVPRE DPDRLLLERE  600
MFGRDAMNVI AYEGLERIDR PETYKQWQFR NQKAGFRQLP LDEKILNRAR TVMKSNYHED  660
FAIEVDCQWI LQGWKGRVIH ALSCWKPVQE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-493156865375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982223.10.0PREDICTED: scarecrow-like protein 30
TrEMBLA0A061GXR20.0A0A061GXR2_THECC; GRAS family transcription factor, putative
STRINGEOY339970.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2859133
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29060.11e-180GRAS family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]