PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG041814t4

Common Name

TCM_041814

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

GRAS

Protein Properties

Length: 677aa MW: 75541.6 Da PI: 4.7641

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG041814t4	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	258.5	2.4e-79	411	677	1	266
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 l++lL+ cA+avs++d + a +lL++++e++sp gd +qRla++f+++L+arl +s++ + + +s +s+++ ++ l+a++++ ++P+ k+ Thecc1EG041814t4 411 LRTLLILCAQAVSADDRRTAGELLKQIKEHSSPLGDGTQRLAHFFANGLEARLDGSGTAIQNLY-SSLASKTTAADMLKAYQVYLCACPFKKL 502 5789*************************************************888887655.555556889*************** PP GRAS 94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvak 184 s + aN++I +e+++++Hi+Df+i +G+QWp L+q L++Rp+gpp+lRiTg++ p+ g +e++eetg+rL++++++++vpfe+n+++a+ Thecc1EG041814t4 503 SIFFANKMIWHMAEKASALHIVDFGILYGFQWPILIQHLSKRPGGPPKLRITGIEIPQRGfrPAERIEETGRRLERYCKRFDVPFEYNPMAAQ 595 ******************************************************99**************************9 PP GRAS 185 rledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 ++e++++e++++k++E+laVn+ ++ ++llde+++++ +r++vLkl+++++P+++v++ + ++n++ Fl+rf eal + sa Thecc1EG041814t4 596 NWETIQVEDIKIKSNEMLAVNCLFRFKNLLDETAEVDCPRNAVLKLIRKMNPDIFVHSIDNGSYNAPFFLTRFREALFHLSA 677 *****************************************************************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	52.11	385	677	IPR005202	Transcription factor GRAS
Pfam	PF03514	8.3E-77	411	677	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence Send to blast
MVMDPKFTEF TDYINGFGVE DDALLFTSGQ YPNFTNGLEF NVSSPDLGFM SANVPVIPPN 60 PDPGISVPPA TVSSDGSSFS ASTGWSPDGE SSSPSDDSDS TDPVLKYIRQ MLMEENMEDK 120 PFMFNDYLAL EDTEKSLYEV LGEQYPPSNQ PQPFLNVNVE SPDSNLSGNS RDNGSNSNST 180 TSISTSNGTS NYIDHWGVGE VVEHAPSLLQ APLSGDYHFQ SNLQQPSSQF SVNSTNSSSN 240 MGNGLMESSL SELLVQNIFS DKESVLQFQR GFEEASKFLP SSNQLIIDLE SNKFPMVQKG 300 KVPNLVVKVE KDERENSPDE LRGRKNHERD DGGLEEERSN KQSAVYTEES DLSDMFDKVL 360 LCTDGKAMCG YNKALQQGET KTLLQKEQSN ESSVGKTRSK KQEKKKETVD LRTLLILCAQ 420 AVSADDRRTA GELLKQIKEH SSPLGDGTQR LAHFFANGLE ARLDGSGTAI QNLYSSLASK 480 TTAADMLKAY QVYLCACPFK KLSIFFANKM IWHMAEKASA LHIVDFGILY GFQWPILIQH 540 LSKRPGGPPK LRITGIEIPQ RGFRPAERIE ETGRRLERYC KRFDVPFEYN PMAAQNWETI 600 QVEDIKIKSN EMLAVNCLFR FKNLLDETAE VDCPRNAVLK LIRKMNPDIF VHSIDNGSYN 660 APFFLTRFRE ALFHLSA

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence Send to blast

MVMDPKFTEF TDYINGFGVE DDALLFTSGQ YPNFTNGLEF NVSSPDLGFM SANVPVIPPN  60
PDPGISVPPA TVSSDGSSFS ASTGWSPDGE SSSPSDDSDS TDPVLKYIRQ MLMEENMEDK  120
PFMFNDYLAL EDTEKSLYEV LGEQYPPSNQ PQPFLNVNVE SPDSNLSGNS RDNGSNSNST  180
TSISTSNGTS NYIDHWGVGE VVEHAPSLLQ APLSGDYHFQ SNLQQPSSQF SVNSTNSSSN  240
MGNGLMESSL SELLVQNIFS DKESVLQFQR GFEEASKFLP SSNQLIIDLE SNKFPMVQKG  300
KVPNLVVKVE KDERENSPDE LRGRKNHERD DGGLEEERSN KQSAVYTEES DLSDMFDKVL  360
LCTDGKAMCG YNKALQQGET KTLLQKEQSN ESSVGKTRSK KQEKKKETVD LRTLLILCAQ  420
AVSADDRRTA GELLKQIKEH SSPLGDGTQR LAHFFANGLE ARLDGSGTAI QNLYSSLASK  480
TTAADMLKAY QVYLCACPFK KLSIFFANKM IWHMAEKASA LHIVDFGILY GFQWPILIQH  540
LSKRPGGPPK LRITGIEIPQ RGFRPAERIE ETGRRLERYC KRFDVPFEYN PMAAQNWETI  600
QVEDIKIKSN EMLAVNCLFR FKNLLDETAE VDCPRNAVLK LIRKMNPDIF VHSIDNGSYN  660
APFFLTRFRE ALFHLSA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	1e-36	396	677	4	272	Protein SCARECROW
5b3h_A	1e-36	396	677	3	271	Protein SCARECROW
5b3h_D	1e-36	396	677	3	271	Protein SCARECROW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in plant development. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021278110.1	0.0	scarecrow-like protein 14
Refseq	XP_021278112.1	0.0	scarecrow-like protein 14
Refseq	XP_021278113.1	0.0	scarecrow-like protein 14
Refseq	XP_021278114.1	0.0	scarecrow-like protein 14
Swissprot	Q9XE58	0.0	SCL14_ARATH; Scarecrow-like protein 14
TrEMBL	A0A061GXR9	0.0	A0A061GXR9_THECC; GRAS family transcription factor, putative isoform 4 (Fragment)
STRING	EOY33999	0.0	(Theobroma cacao)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	0.0	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Thecc1EG041814t4
Entrez Gene	18590668

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]