PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041866t1
Common NameTCM_041866
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WOX
Protein Properties Length: 260aa    MW: 28717.2 Da    PI: 7.9018
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041866t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.27.6e-202079357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+++tkeq+  Le+l+ +  r+psa+++++++++l     ++ ++V++WFqN++a++++
  Thecc1EG041866t1 20 SRWNPTKEQISLLESLYMQgIRTPSADQIQQITSRLkvygTIEGKNVFYWFQNHKARQRQ 79
                      7*****************99****************99999*****************97 PP
2Wus_type_Homeobox112.91.7e-361981365
  Wus_type_Homeobox  3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++RW+Pt+eQi +Le+ly +G+rtP++++iq+it++L+ yG ie+kNVfyWFQN+kaR+rqkq
   Thecc1EG041866t1 19 NSRWNPTKEQISLLESLYMQGIRTPSADQIQQITSRLKVYGTIEGKNVFYWFQNHKARQRQKQ 81
                       79***********************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.8511580IPR001356Homeobox domain
SMARTSM003893.9E-61784IPR001356Homeobox domain
SuperFamilySSF466891.24E-121786IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.5E-82079IPR009057Homeodomain-like
PfamPF000461.6E-172079IPR001356Homeobox domain
CDDcd000864.41E-72181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008284Biological Processpositive regulation of cell proliferation
GO:0009942Biological Processlongitudinal axis specification
GO:0010654Biological Processapical cell fate commitment
GO:0048825Biological Processcotyledon development
GO:0080167Biological Processresponse to karrikin
GO:0090451Biological Processcotyledon boundary formation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MEMEGGNMDM AGSGGTTGNS RWNPTKEQIS LLESLYMQGI RTPSADQIQQ ITSRLKVYGT  60
IEGKNVFYWF QNHKARQRQK QKQENMAYIN RYLHRTQPVY PPPPRAGPNV VCGPYFLPQG  120
DLGFYPHQCP KVLLPGAVKR RGRPEKMEKA RVYGTGAAYD LVHQECNTMM PDIENYGGVL  180
NNGNHETLAL FPLHPTGVLD ARATMSSLGS TTSAGNSTTP SSSCETTAGI DQEGYGTEQR  240
FFDFFSSQGS CESDLKYGH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016457.10.0PREDICTED: WUSCHEL-related homeobox 2
TrEMBLA0A061GX690.0A0A061GX69_THECC; WUSCHEL related homeobox 2, putative
STRINGEOY340760.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69142844
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G59340.11e-53WUSCHEL related homeobox 2
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]