PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG041963t1
Common NameTCM_041963
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family WOX
Protein Properties Length: 256aa    MW: 29116 Da    PI: 9.0916
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG041963t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.85e-20766357
                      --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
          Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                      +R+++t+eql +Lee++++  r+p+a+++++++++l    +++ ++V++WFqN++a++++
  Thecc1EG041963t1  7 SRWCPTPEQLMILEEMYRSgIRTPNASQIQKITSHLsfygKIEGKNVFYWFQNHKARDRQ 66
                      7*****************99*************************************996 PP
2Wus_type_Homeobox120.47.6e-39567264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       a++RW+PtpeQ++iLee+y+sG+rtPn+++iq+it++L+ yGkie+kNVfyWFQN+kaR+rqk
   Thecc1EG041963t1  5 ASSRWCPTPEQLMILEEMYRSGIRTPNASQIQKITSHLSFYGKIEGKNVFYWFQNHKARDRQK 67
                       689***********************************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007110.203267IPR001356Homeobox domain
SMARTSM003892.6E-4471IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.4E-7766IPR009057Homeodomain-like
SuperFamilySSF466893.64E-11766IPR009057Homeodomain-like
PfamPF000461.0E-17766IPR001356Homeobox domain
CDDcd000868.56E-5867No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009908Biological Processflower development
GO:0009943Biological Processadaxial/abaxial axis specification
GO:0009947Biological Processcentrolateral axis specification
GO:0010865Biological Processstipule development
GO:0048513Biological Processanimal organ development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MSPAASSRWC PTPEQLMILE EMYRSGIRTP NASQIQKITS HLSFYGKIEG KNVFYWFQNH  60
KARDRQKLRR KLTKQLQLQQ QLYHQHHHHQ LQQNHPNHHF LHYFDSPGSP AFQHLSYFNS  120
ASLFPQVGVH EDAAAKQVMN YTWKFDIPEK VENMDKATMR MYGGDWLTMV DLGSPLSSPC  180
YSTAIRPPLK TLELFPVTAS NLKEECNSSK HLSCISTTTT TTTTTTTTPN PTPDIPLNLP  240
LNPPENKPQA LSLSA*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor required to initiate organ founder cells in a lateral domain of shoot meristems. Involved in the lateral sepal axis-dependent development of flowers, probably by regulating the proliferation of L1 cells at the lateral region of flower primordia. Required for the formation of the margin cells of the first and second whorl organs. {ECO:0000269|PubMed:11751640, ECO:0000269|PubMed:15169755}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007016605.21e-158PREDICTED: WUSCHEL-related homeobox 3
SwissprotQ9SIB42e-46WOX3_ARATH; WUSCHEL-related homeobox 3
TrEMBLA0A061H0610.0A0A061H061_THECC; Homeodomain-like superfamily protein, putative
STRINGEOY342240.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74802642
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28610.16e-45WOX family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Chandler JW,Werr W
    Arabidopsis floral phytomer development: auxin response relative to biphasic modes of organ initiation.
    J. Exp. Bot., 2014. 65(12): p. 3097-110
    [PMID:24744428]
  3. Niu L, et al.
    LOOSE FLOWER, a WUSCHEL-like Homeobox gene, is required for lateral fusion of floral organs in Medicago truncatula.
    Plant J., 2015. 81(3): p. 480-92
    [PMID:25492397]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]