PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042067t2
Common NameTCM_042067
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family ARF
Protein Properties Length: 701aa    MW: 76733.8 Da    PI: 7.3801
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042067t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.42.8e-23113214199
                       EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-S CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldg 86 
                       f k+lt+sd+++ g +++p+ +ae++         ++ +  t++ +d +g+ W++++iyr++++r++lt+GW+ Fv++++L +gD++vF   +
  Thecc1EG042067t2 113 FAKTLTQSDANNGGGFSVPRYCAETIfprldytADPPVQ--TVIAKDVHGEIWKFRHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFL--R 201
                       89****************************997556555..8************************************************..4 PP

                       SSEE..EEEEE-S CS
                B3  87 rsefelvvkvfrk 99 
                        +++ l+v+++r+
  Thecc1EG042067t2 202 AENGDLCVGIRRA 214
                       488999****997 PP
2Auxin_resp113.81.5e-37283365283
        Auxin_resp   2 ahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                       +  a+ +++Fev+Y+Prast+eF+vk++ v++a++++++ GmRfkmafetedss++++ +Gtv++v+ +dp+rWpnS+Wr+L+
  Thecc1EG042067t2 283 VALAAGGQPFEVIYYPRASTPEFCVKASGVKAAMRIHWCSGMRFKMAFETEDSSRISWfMGTVSSVQVADPIRWPNSPWRLLQ 365
                       6678899**************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.1E-37104220IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.29E-28109217IPR015300DNA-binding pseudobarrel domain
CDDcd100173.01E-21112213No hitNo description
PROSITE profilePS5086312.943113215IPR003340B3 DNA binding domain
PfamPF023622.5E-21113214IPR003340B3 DNA binding domain
SMARTSM010195.1E-22113215IPR003340B3 DNA binding domain
PfamPF065071.7E-32282365IPR010525Auxin response factor
PROSITE profilePS5174518.034604684IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007389Biological Processpattern specification process
GO:0009734Biological Processauxin-activated signaling pathway
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0009743Biological Processresponse to carbohydrate
GO:0010154Biological Processfruit development
GO:0031540Biological Processregulation of anthocyanin biosynthetic process
GO:0048366Biological Processleaf development
GO:0048441Biological Processpetal development
GO:0048442Biological Processsepal development
GO:0048589Biological Processdevelopmental growth
GO:0048829Biological Processroot cap development
GO:0051301Biological Processcell division
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 701 aa     Download sequence    Send to blast
MKEPEKSLDP QLWHACAGSM VQIPPVNSKV FYFPQGHAEH SLSSVDFSSS PQIPAFVICR  60
VASVKFLADT ETDEVYAKIM LIPLSNSELD LEEDAVLGGG SNGSDNVEKP ASFAKTLTQS  120
DANNGGGFSV PRYCAETIFP RLDYTADPPV QTVIAKDVHG EIWKFRHIYR GTPRRHLLTT  180
GWSTFVNQKK LVAGDSIVFL RAENGDLCVG IRRAKRGIGN GPESGTPGWN SGLGNGNCVG  240
PYGGFSAFLR EDESKIMRNG NLGCGGNLRG KGKVRPEAVL EAVALAAGGQ PFEVIYYPRA  300
STPEFCVKAS GVKAAMRIHW CSGMRFKMAF ETEDSSRISW FMGTVSSVQV ADPIRWPNSP  360
WRLLQVTWDE PDLLQNVKRV SPWLVELVSN MPAIHLSPFS PPRKKLRLPQ HLDLPLDGQF  420
LMPSFSGNPL GPSSPLHCLS DNAPAGIQGA RHAQFGLSLS DLHLNNKLQS GLFLSSFQRF  480
DPHSRISNGI MMARRTNSND NLSCLLTMGS SSQEEKSDNA KRHQFLLFGQ PILTEQQLSR  540
SCSSEAVSQV INGKSSVDGN ADKTKDASDG SGSALENQFS PEKSSPARFL WHPDYRTTEP  600
GLDTGHCKVF LESEDVGRTL DLSVLSSYEE LYKRLANMFG IERSEMLGHV LYRDATGAVK  660
QTGDVPFSAF IKTAKRLTIR MDSGNDTVGR SVMAYWDSNC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A8e-79838651388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017982693.10.0PREDICTED: auxin response factor 10
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLA0A061GY670.0A0A061GY67_THECC; Auxin response factor
STRINGEOY343770.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28350.10.0auxin response factor 10
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]