PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042392t2
Common NameTCM_042392
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family GRAS
Protein Properties Length: 481aa    MW: 54026.2 Da    PI: 6.0732
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042392t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS458.44.3e-140454741373
              GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkf 93 
                       l++lL++cA++v++g+le+a+  L+++s+laspdgd+mqR+aayfteALa r+++ +++l kal++++ s  ++see+ ++klf+e++P+lk+
  Thecc1EG042392t2  45 LIHLLVQCANHVAAGSLENANIGLEQISHLASPDGDTMQRIAAYFTEALADRMLKAWPGLHKALNSTKIS--SVSEEILVQKLFFELFPFLKL 135
                       689*************************************************************999998..6******************** PP

              GRAS  94 shltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrl 186
                       +++++NqaI+ea+ege++vHiiD++ s+++QW++L+q++++Rpegpp+lRiTg+++    +ke le+++ rL++ Ae+l++pf+fn+ ++ +l
  Thecc1EG042392t2 136 AYVITNQAIVEAMEGEKMVHIIDLNSSEPAQWINLFQTFSARPEGPPHLRITGIHE----QKEVLEQMALRLTEEAEKLDIPFQFNP-IVCKL 223
                       ********************************************************....9**************************.5788* PP

              GRAS 187 edleleeLrvkpgEalaVnlvlqlhrll..............................................................des 217
                       e+l+le+Lrvk+gEalaV++vlqlh+ll                                                              +++
  Thecc1EG042392t2 224 ENLDLESLRVKTGEALAVSSVLQLHSLLapddemlrrninspsvsknlnssrphrvlqvnqrtlgewlekepvhiyspsssdlaspspspSSP 316
                       ****************************************************************************************99666 PP

              GRAS 218 vsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrer 308
                       +sl+   +  ++L +++ lsPk++vv+eqe++hn+++++er++eal++y+alfd+le++l+r+  er+kvE++l+g+ei+n++aceg er+er
  Thecc1EG042392t2 317 LSLAPapKLGSFLTALRALSPKLIVVTEQESNHNGPTLMERVMEALNFYAALFDCLESTLSRAPLERQKVEKMLFGEEIKNIIACEGLERKER 409
                       66665557889********************************************************************************** PP

              GRAS 309 hetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       he+lekW  rle aGF+ vpls++ + qa +ll++ + dgy+++ee+g+lv++W++rpL+s+SaW
  Thecc1EG042392t2 410 HEKLEKWILRLELAGFGRVPLSYHGMLQAGRLLQTNNYDGYKIKEENGCLVMCWQERPLYSMSAW 474
                       ***************************************************************** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098558.56119455IPR005202Transcription factor GRAS
PfamPF035141.5E-13745474IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MIQEGPSSVT SPPLPFLPWM SLSPGLGSPF PWLRELKSEE RGLYLIHLLV QCANHVAAGS  60
LENANIGLEQ ISHLASPDGD TMQRIAAYFT EALADRMLKA WPGLHKALNS TKISSVSEEI  120
LVQKLFFELF PFLKLAYVIT NQAIVEAMEG EKMVHIIDLN SSEPAQWINL FQTFSARPEG  180
PPHLRITGIH EQKEVLEQMA LRLTEEAEKL DIPFQFNPIV CKLENLDLES LRVKTGEALA  240
VSSVLQLHSL LAPDDEMLRR NINSPSVSKN LNSSRPHRVL QVNQRTLGEW LEKEPVHIYS  300
PSSSDLASPS PSPSSPLSLA PAPKLGSFLT ALRALSPKLI VVTEQESNHN GPTLMERVME  360
ALNFYAALFD CLESTLSRAP LERQKVEKML FGEEIKNIIA CEGLERKERH EKLEKWILRL  420
ELAGFGRVPL SYHGMLQAGR LLQTNNYDGY KIKEENGCLV MCWQERPLYS MSAWGFRRYD  480
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A3e-42334747378Protein SCARECROW
5b3h_A3e-42334746377Protein SCARECROW
5b3h_D3e-42334746377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984095.10.0PREDICTED: scarecrow-like protein 3 isoform X1
RefseqXP_017984097.10.0PREDICTED: scarecrow-like protein 3 isoform X1
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A061FKL00.0A0A061FKL0_THECC; Scarecrow-like protein 3 isoform 1
STRINGEOY176060.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  3. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  4. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]