PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042466t1
Common NameTCM_042466
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family LBD
Protein Properties Length: 173aa    MW: 19248 Da    PI: 8.114
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042466t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260129.71.3e-40111101100
            DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkae 93 
                       +CaaCk+l+r+C+++C++apyf +++pkkfa vhk+FGasnv+k+l ++pee+re++++sl+yeAear+rdPvyG++g i  lq+++ +l+++
  Thecc1EG042466t1  11 SCAACKLLKRRCTPNCIFAPYFRSDEPKKFAKVHKVFGASNVSKILIEVPEEQREETVNSLAYEAEARLRDPVYGCIGAIALLQRKMIELQHD 103
                       6******************************************************************************************** PP

            DUF260  94 lallkee 100
                       lal++e+
  Thecc1EG042466t1 104 LALARER 110
                       **99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.59510111IPR004883Lateral organ boundaries, LOB
PfamPF031956.8E-4011108IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRSQEPRSRA SCAACKLLKR RCTPNCIFAP YFRSDEPKKF AKVHKVFGAS NVSKILIEVP  60
EEQREETVNS LAYEAEARLR DPVYGCIGAI ALLQRKMIEL QHDLALARER LARYAATTSS  120
AIISSDRVSM GPFGEFQVPA ASCGGFIDSF SLNSFEVNQD AHMYDFSQIP YV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A4e-4761256125LOB family transfactor Ramosa2.1
5ly0_B4e-4761256125LOB family transfactor Ramosa2.1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007008910.11e-125PREDICTED: LOB domain-containing protein 21
SwissprotQ9SRL86e-67LBD21_ARATH; LOB domain-containing protein 21
TrEMBLA0A061FK881e-124A0A061FK88_THECC; LOB domain-containing protein, putative
STRINGEOY177201e-125(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM102552735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11090.13e-61LOB domain-containing protein 21
Publications ? help Back to Top
  1. Weber AP,Weber KL,Carr K,Wilkerson C,Ohlrogge JB
    Sampling the Arabidopsis transcriptome with massively parallel pyrosequencing.
    Plant Physiol., 2007. 144(1): p. 32-42
    [PMID:17351049]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]