PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042467t1

Common Name

TCM_042467

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Trihelix

Protein Properties

Length: 242aa MW: 27521.2 Da PI: 10.2074

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042467t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.3	9.8e-14	23	106	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +W++ + +Liea ++ rl+rg+l++++W+ev++++ r+ g +++ +qCk++++ l+k+yk +++ s++p+f++++ Thecc1EG042467t1 23 CWSEGATGTLIEAWGDRYLRLNRGNLRQKDWQEVADAVnsRQNGAkpRKTDVQCKNRIDTLKKKYKLERAKPPP------SKWPFFKRID 106 7***********************************885555544779*************9998886......58***997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	1.4E-26	21	108	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 242 aa Download sequence Send to blast
MNLRGLPHIT HSSGGSGGGR EDCWSEGATG TLIEAWGDRY LRLNRGNLRQ KDWQEVADAV 60 NSRQNGAKPR KTDVQCKNRI DTLKKKYKLE RAKPPPSKWP FFKRIDSLIG ANASVNKKHS 120 AVTFTIKPKA TSFLKGPRST ESSFGDEDGD EDEVRKEHRV EDVGLSDGAA CRELARAILK 180 FGEIYERIES SKQQQMMELE KQRMEFTKDL EFQRMNMLVD AQLEMEKSKR QKHLTRSGKK 240 H*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269\|PubMed:21330492}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00488	DAP	Transfer from AT5G05550	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007008911.2	1e-180	PREDICTED: trihelix transcription factor ASIL2
Swissprot	Q9LJG8	4e-36	ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBL	A0A061FKY6	1e-179	A0A061FKY6_THECC; Sequence-specific DNA binding transcription factors
STRING	EOY17721	1e-180	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4926	21	41

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G05550.1	1e-72	sequence-specific DNA binding transcription factors

Link Out ? help Back to Top
Phytozome	Thecc1EG042467t1
Entrez Gene	18585820

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]