PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042474t1

Common Name

TCM_042474

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

MYB

Protein Properties

Length: 237aa MW: 26196.2 Da PI: 7.185

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042474t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	57.6	3e-18	9	54	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W+++Ed l+++v+q+G+++W+ I++ ++ gR++k+c++rw + Thecc1EG042474t1 9 KGSWSPQEDANLIRLVEQHGPRNWSMISSGIP-GRSGKSCRLRWCNQ 54 799***************************.*********985 PP
2	Myb_DNA-binding	52.5	1.2e-16	63	105	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+ Ed +++a++ +G++ W+tIar ++ gRt++ +k++w++ Thecc1EG042474t1 63 PFTPAEDAVIIRAHAAHGNK-WATIARQLP-GRTDNAVKNHWNST 105 89****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	19.573	4	55	IPR017930	Myb domain
SuperFamily	SSF46689	2.58E-30	7	102	IPR009057	Homeodomain-like
SMART	SM00717	1.2E-15	8	57	IPR001005	SANT/Myb domain
Pfam	PF00249	1.5E-17	9	54	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.2E-24	10	62	IPR009057	Homeodomain-like
CDD	cd00167	2.72E-14	11	53	No hit	No description
PROSITE profile	PS51294	25.689	56	110	IPR017930	Myb domain
SMART	SM00717	4.1E-14	60	108	IPR001005	SANT/Myb domain
Pfam	PF00249	5.7E-14	63	105	IPR001005	SANT/Myb domain
CDD	cd00167	9.48E-11	63	106	No hit	No description
Gene3D	G3DSA:1.10.10.60	6.3E-24	63	109	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MIKGGDRVKG SWSPQEDANL IRLVEQHGPR NWSMISSGIP GRSGKSCRLR WCNQLSPDVQ 60 HRPFTPAEDA VIIRAHAAHG NKWATIARQL PGRTDNAVKN HWNSTLRRKR AAELSSGSSE 120 SNNSAVKRWS SQDASESDSG NKRQCLRVEV HENVEFVGPK TLLTLSPPGE SVVSGHMEEK 180 VEDEEEEEVV KRDEEGGGRG GGGGGEEEKR RVEMKETCLL TIMQRMIKEE FVAFNG*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1gv2_A	8e-37	8	109	3	104	MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	196	204	GGRGGGGGG

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007008918.1	1e-173	PREDICTED: transcriptional activator Myb isoform X2
TrEMBL	A0A061FLG6	1e-172	A0A061FLG6_THECC; Myb domain protein 73
STRING	EOY17728	1e-173	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM677	28	135

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	3e-54	myb domain protein 77

Link Out ? help Back to Top
Phytozome	Thecc1EG042474t1
Entrez Gene	18585827

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]