PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042475t1

Common Name

TCM_042475

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

bHLH

Protein Properties

Length: 259aa MW: 28535.4 Da PI: 8.4942

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042475t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	45.5	1.3e-14	69	115	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN ++ Lr+l+Pk+ K++Ka+ L A+e++k+L Thecc1EG042475t1 69 KSHSQAEKRRRDRINAQLAALRKLIPKS-----DKMDKAALLGSAIEHVKDL 115 68***********************8.....7**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.193	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.7E-16	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.8E-12	69	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.79E-14	69	122	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.56E-11	69	118	No hit	No description
SMART	SM00353	1.5E-12	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd04873	4.95E-5	164	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 259 aa Download sequence Send to blast
MENCYLSSWP EGENWAEFNA TPSNESSFTV PLPIEPRFSA SSSVQCQGFP SWVVPIEGVA 60 EDRATVVSKS HSQAEKRRRD RINAQLAALR KLIPKSDKMD KAALLGSAIE HVKDLKRKAT 120 EVSKAFTIPT EVDEVTVDCD LPENISPPTN PRQTKDNKIF IRASVCCDDR PEVFAELIRV 180 LKGLRLSTVK ADISSVGGRM RSNLILCNDD SEDQGVSPST LKQSLNVVLS RIASSSAGSN 240 CRIRSKRQRL FLPSQFTQ*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007008919.1	0.0	PREDICTED: transcription factor bHLH51
TrEMBL	A0A061FT34	0.0	A0A061FT34_THECC; Basic helix-loop-helix DNA-binding superfamily protein, putative
STRING	EOY17729	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6806	25	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	4e-57	bHLH family protein

Link Out ? help Back to Top
Phytozome	Thecc1EG042475t1
Entrez Gene	18585828

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]