PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042508t1
Common NameTCM_042508
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 147aa    MW: 16786 Da    PI: 8.2145
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042508t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B345.51.4e-14593190
                      EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsef 90
                      f k+lt  dv k+  l++p ++++++   g    +s +l++ed++g  W++ l+ rk++    ++++GW++Fv+  +L+egD v F+ d ++++
  Thecc1EG042508t1  5 FAKTLTETDVQKR--LSIPFTCLKDFefhG---SNSAQLRVEDQNGSIWSFALSTRKNGHPkPIFSGGWRQFVRCGHLCEGDRVEFYKDTKENG 93
                      7899999999876..9*******9996533...46778***************87555544699***********************6544444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.0E-17292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.2643103IPR003340B3 DNA binding domain
CDDcd100172.99E-15499No hitNo description
SuperFamilySSF1019362.55E-15494IPR015300DNA-binding pseudobarrel domain
SMARTSM010190.00155103IPR003340B3 DNA binding domain
PfamPF023625.0E-11593IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 147 aa     Download sequence    Send to blast
MEMLFAKTLT ETDVQKRLSI PFTCLKDFEF HGSNSAQLRV EDQNGSIWSF ALSTRKNGHP  60
KPIFSGGWRQ FVRCGHLCEG DRVEFYKDTK ENGFYRIQVQ RCIKLFGKKC WVALPLDQRR  120
VNFEEGTEAA AAAEAEAKEE ESKKNT*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A061FT631e-105A0A061FT63_THECC; Uncharacterized protein
STRINGEOY177891e-106(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G25730.17e-09ethylene response DNA binding factor 3
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]