PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042511t1
Common NameTCM_042511
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 136aa    MW: 16226.4 Da    PI: 9.486
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042511t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.58.9e-17599196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
                B3  1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94
                      f k+l   d+  ++rl++p ++++++  +k  s+ +++ede+g+ W++k+++ r + ++ v+ +GW +Fv+  +L+ gD v F+ d + e+ +++
  Thecc1EG042511t1  5 FSKQL--TDTDLKKRLSIPTQCLNHFRFDKGHSTSVQVEDENGKAWQFKCRVrREGYQKPVFCEGWLKFVRYTNLRPGDRVEFYKDTEAEGLYRI 97
                      77888..56666678********88888889999****************88555555699999********************66555555666 PP

                      EE CS
                B3 95 kv 96
                      +v
  Thecc1EG042511t1 98 QV 99
                      65 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-20292IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086310.7853103IPR003340B3 DNA binding domain
SuperFamilySSF1019365.89E-16497IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-19499No hitNo description
PfamPF023622.3E-145101IPR003340B3 DNA binding domain
SMARTSM010191.4E-55103IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 136 aa     Download sequence    Send to blast
METMFSKQLT DTDLKKRLSI PTQCLNHFRF DKGHSTSVQV EDENGKAWQF KCRVRREGYQ  60
KPVFCEGWLK FVRYTNLRPG DRVEFYKDTE AEGLYRIQVQ RRVKLLGKEF WANLRPDEQR  120
INFEERTEAA AKEEK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021296038.15e-59B3 domain-containing transcription factor NGA4-like
TrEMBLA0A061FM904e-96A0A061FM90_THECC; Uncharacterized protein
STRINGEOY177926e-97(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16950410
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.15e-10B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]