PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042512t1
Common NameTCM_042512
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 141aa    MW: 16546.3 Da    PI: 10.4509
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042512t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B349.86.2e-1628118190
                       EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS
                B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsef 90 
                       f kvl  s +  ++rl +p + + ++   +k++  +  +ed  g++W + ++ rkk+ +   v +kGW++Fvk+++L++gD vv++ dg+ + 
  Thecc1EG042512t1  28 FSKVL--SPTDIEHRLAVPSEILWAFeFDDKARAADFHVEDVAGQKWHFSCSTRKKDFHpkPVVSKGWRRFVKDKRLRVGDKVVLYKDGEGGS 118
                       67788..55666678*******9999966778999****************877777669999***********************7665444 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.4E-1823118IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.44626128IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-1527118IPR015300DNA-binding pseudobarrel domain
CDDcd100171.90E-1627117No hitNo description
PfamPF023621.3E-1228118IPR003340B3 DNA binding domain
SMARTSM010192.4E-528135IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 141 aa     Download sequence    Send to blast
MQELRCFLFL TKPFLFQRLL QQTMKQLFSK VLSPTDIEHR LAVPSEILWA FEFDDKARAA  60
DFHVEDVAGQ KWHFSCSTRK KDFHPKPVVS KGWRRFVKDK RLRVGDKVVL YKDGEGGSSH  120
KIKTMKRVFK LFGEEVWLES *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012461799.19e-62PREDICTED: B3 domain-containing transcription factor NGA4-like
TrEMBLA0A061FLL32e-97A0A061FLL3_THECC; ABI3/VP1 2, putative
STRINGEOY177933e-98(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2206445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.13e-09B3 family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]