PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG042730t1

Common Name

TCM_042730

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

LBD

Protein Properties

Length: 228aa MW: 25001.1 Da PI: 4.5102

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG042730t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	126.4	1.4e-39	7	106	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 +C aCk+lrrkC+++Cv+apyf+ ++ +++fa+vhk+FGasnv+kll +lp ++r+da+ ++ yeA ar+rdP+yG+v++i++lqqq+++l++ Thecc1EG042730t1 7 SCGACKFLRRKCTSECVFAPYFCYDEaASHFAAVHKVFGASNVSKLLLHLPMHNRSDAAVTISYEALARMRDPIYGCVAHIFALQQQVANLQE 99 6*********************9868*************************************************************** PP DUF260 93 elallke 99 e++ l + Thecc1EG042730t1 100 EIEILIN 106 *997755 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	22.668	6	108	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.6E-37	7	103	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 228 aa Download sequence Send to blast
MTGLGSSCGA CKFLRRKCTS ECVFAPYFCY DEAASHFAAV HKVFGASNVS KLLLHLPMHN 60 RSDAAVTISY EALARMRDPI YGCVAHIFAL QQQVANLQEE IEILINQMAN HAADQVPSCG 120 NTQAATYPDG KIQFASLHET ISTVYYQDEQ AALPTNHPGL LTGNQILDAQ LCEPLPPSYE 180 WEDQNFLCNF YQNPPEINLE GVESGILIDY PCMGSSGTTT NWEGPSW*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-36	3	116	7	119	LOB family transfactor Ramosa2.1
5ly0_B	7e-36	3	116	7	119	LOB family transfactor Ramosa2.1
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007009269.1	1e-172	PREDICTED: LOB domain-containing protein 14
TrEMBL	A0A061FTN7	1e-170	A0A061FTN7_THECC; LOB domain-containing protein 29
STRING	EOY18079	1e-171	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM108	28	359

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06080.1	1e-59	LOB domain-containing protein 33

Link Out ? help Back to Top
Phytozome	Thecc1EG042730t1
Entrez Gene	18586060

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]