PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG042744t1
Common NameTCM_042744
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB_related
Protein Properties Length: 65aa    MW: 7227.1 Da    PI: 7.708
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG042744t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.51.3e-12556147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
   Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                      ++ WT+eE+e l+ +v+++ +g Wk I +         +R+  ++k++w+++
  Thecc1EG042744t1  5 KQIWTAEEEETLLAGVAKHSPGKWKNILEDPDfaphlPRRSNIDLKDKWRNL 56
                      577*************************9999999999************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.302161IPR017930Myb domain
SuperFamilySSF466891.29E-15256IPR009057Homeodomain-like
SMARTSM007177.3E-6459IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.0E-15556IPR009057Homeodomain-like
PfamPF139214.3E-10862No hitNo description
CDDcd116603.81E-17856No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 65 aa     Download sequence    Send to blast
MGNQKQIWTA EEEETLLAGV AKHSPGKWKN ILEDPDFAPH LPRRSNIDLK DKWRNLSVST  60
SGQG*
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007024539.15e-34PREDICTED: telomere repeat-binding factor 4
RefseqXP_021294179.15e-34telomere repeat-binding factor 4
SwissprotF4I7L13e-26TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A061FLB38e-40A0A061FLB3_THECC; Uncharacterized protein
STRINGEOY181051e-40(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16580812
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-28MYB_related family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]