PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG043101t1
Common NameTCM_043101
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family MYB
Protein Properties Length: 1207aa    MW: 131964 Da    PI: 5.1926
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG043101t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.76.3e-09816857346
                       SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
   Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       +WT eE e++ d  + +G++ +++Ia+ +  ++t  +c+++++k
  Thecc1EG043101t1 816 PWTSEEKEIFMDKLAAFGKD-FRKIASFLD-HKTTADCVEFYYK 857
                       8*****************99.*********.***********98 PP
2Myb_DNA-binding34.16.5e-1110361075445
                        S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
   Myb_DNA-binding    4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45  
                        WT eE   +++av ++G++ ++ I+r++g +R++ qck ++ 
  Thecc1EG043101t1 1036 WTDEEKSVFIQAVSLYGKD-FAMISRCVG-TRSRDQCKVFFS 1075
                        *****************99.*********.********8776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.11E-14800861IPR009057Homeodomain-like
PROSITE profilePS5129315.02812863IPR017884SANT domain
SMARTSM007176.5E-8813861IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-5813858IPR009057Homeodomain-like
PfamPF002494.7E-6815857IPR001005SANT/Myb domain
PROSITE profilePS5129311.87610311082IPR017884SANT domain
SMARTSM007171.0E-810321080IPR001005SANT/Myb domain
SuperFamilySSF466895.93E-1110351082IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.6E-610351076IPR009057Homeodomain-like
PfamPF002492.4E-810361075IPR001005SANT/Myb domain
CDDcd001671.09E-710361074No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1207 aa     Download sequence    Send to blast
MPPEPLPWDR KDFYKERKHE RTESQPQQPS TARWRDSSSM SSYQHGSFRE FTRWGSADLR  60
RPPGHGKQGS WHLFAEENGG HGYVPSRSGD KMLDDESCRQ SVSRGDGKYS RNSSRENNRA  120
SYSQRDWRAH SWEMSNGSPN TPGRPHDVNN EQRSVDDMLT YPSHAHSDFV STWDQLHKDQ  180
HDNKTSGVNG LGTGQRCERE NSVGSMDWKP LKWSRSGSLS SRGSGFSHSS SSKSLGGVDS  240
GEGKLELQQK NLTPVQSPSG DAAACVTSAA PSDETMSRKK PRLGWGEGLA KYEKKKVEGP  300
DTSMNRGVAT ISVGNTEPNN SLGSNLAEKS PRVLGFSDCA SPATPSSVAC SSSPGVEEKS  360
FGKAANIDND ISNLCGSPSL GSQNHLEGPS FNLEKLDMNS IINMGSSLVD LLQSDDPSTV  420
DSSFVRSTAM NKLLLWKGDV LKALETTESE IDSLENELKT LKANSGSRYP CPATSSSLPM  480
EENGRACEEL EAISNMIPRP APLKIDPCGD ALEEKVPLCN GDLEEVNADA KDGDIDSPGT  540
ATSKFVEPSS LEKAVSPSDV KLHECSGDLG TVQLTTMGEV NLAPGSSNEG TSVPFSGEGS  600
ALEKIDNDVH GPEPSNSVAD IENIMYDVII ATNKELANSA SKVFNNLLPK DWCSVISEIA  660
NGACWQTDSL IREKIVKRKQ CIRFKERVLM LKFKAFQHAW KEDMRSPLIR KYRAKSQKKY  720
ELSLRSTLGG YQKHRSSIRS RLTSPAGNLS LESNVEMINF VSKLLSDSHV RLYRNALKMP  780
ALFLDEKEKQ VSRFISSNGL VEDPCAVEKE RALINPWTSE EKEIFMDKLA AFGKDFRKIA  840
SFLDHKTTAD CVEFYYKNHK SECFEKTKKK LDLSKQGKST ANTYLLTSGK KWSRELNAAS  900
LDVLGEASVI AAHAESGMRN RQTSAGRIFL GGRFDSKTSR VDDSIVERSS SFDVIGNDRE  960
TVAADVLAGI CGSLSSEAMS SCITSSADPG ESYQREWKCQ KVDSVVKRPS TSDVTQNIDD  1020
DTCSDESCGE MDPADWTDEE KSVFIQAVSL YGKDFAMISR CVGTRSRDQC KVFFSKARKC  1080
LGLDLIHPRT RNLGTPMSDD ANGGGSDIED ACVLESSVVC SDKLGSKVEE DLPSTIVSMN  1140
VDESDPTGEV SLQTDLNVSE ENNGRLVDHR DSEAVETMVS DVGQPEPICE SGGDMNVGQL  1200
ILALLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4a69_C3e-16774865494NUCLEAR RECEPTOR COREPRESSOR 2
4a69_D3e-16774865494NUCLEAR RECEPTOR COREPRESSOR 2
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankJX5788051e-133JX578805.1 Gossypium hirsutum clone NBRI_GE10901 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984688.10.0PREDICTED: uncharacterized protein LOC18586364 isoform X1
TrEMBLA0A061FMP20.0A0A061FMP2_THECC; Duplicated homeodomain-like superfamily protein isoform 1
STRINGEOY185960.0(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G52250.10.0MYB family protein
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]