PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG044619t1
Common NameTCM_044619
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 146aa    MW: 17056.4 Da    PI: 8.2023
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG044619t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM53.95.9e-17911032128
               NAM  32 evikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk..kgelvglkktLvfykgrapkge 117
                       + ik++d+y   ePw++      +  ++++++yfF+k +kk+++++r nr++  g+W    + k+++s+    +  g kk L +  g  p+ +
  Thecc1EG044619t1   9 DLIKDFDLYGEkEPWEIWDlyggCNLQSDEDLYFFTKLKKKSQNSSRINRSVGMGTWMGEDSGKPIYSHlsAVQPLGFKKRLRYE-GGVPH-Q 99 
                       56999*9996449**99633555333467899************************************8767777********97.66666.5 PP

               NAM 118 ktdWvmheyrl 128
                         +W+mhey+l
  Thecc1EG044619t1 100 VGQWIMHEYSL 110
                       89*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100522.1171130IPR003441NAC domain
SuperFamilySSF1019411.02E-196129IPR003441NAC domain
PfamPF023657.1E-921110IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 146 aa     Download sequence    Send to blast
MSMLHLDQDL IKDFDLYGEK EPWEIWDLYG GCNLQSDEDL YFFTKLKKKS QNSSRINRSV  60
GMGTWMGEDS GKPIYSHLSA VQPLGFKKRL RYEGGVPHQV GQWIMHEYSL NIDLVPENDQ  120
GYVLCRLRKN DREEKKAEKR RKLIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1127142RKNDREEKKAEKRRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984351.16e-95PREDICTED: NAC domain-containing protein 101
TrEMBLA0A061FRF91e-104A0A061FRF9_THECC; Uncharacterized protein
STRINGEOY195031e-104(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.11e-17NAC-domain protein 101
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]