PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG044633t1
Common NameTCM_044633, TCM_044639
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 170aa    MW: 19787.6 Da    PI: 9.5333
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG044633t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM76.46.5e-2421342128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleev.ikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                        +Gf F+P+d  l+ +yL  kv++k+ l+l++v ik++d+y   ePw++       ++ ++++++yfF+k +kk+++g+r nr++ +g+W   
  Thecc1EG044633t1   2 FVGFGFEPSDRSLM-CYLFSKVTSKSmLHLDQVqIKDFDLYGEkEPWEIWDlhggfNL-QSDEDLYFFTKLKKKSQNGSRINRSVGTGTWMGE 92 
                       68************.8888888888866777778******96449*999633454333.357899**************************** PP

               NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        + k+++s+    +  g k+ + +  g  p+ +  +W+mhey+l
  Thecc1EG044633t1  93 DSGKPIYSRlsAIQPLGFKRRFRYE-GGVPQ-QVGQWIMHEYSL 134
                       ********9766777********97.55555.589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100527.6811154IPR003441NAC domain
SuperFamilySSF1019419.02E-262153IPR003441NAC domain
PfamPF023656.6E-143134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MFVGFGFEPS DRSLMCYLFS KVTSKSMLHL DQVQIKDFDL YGEKEPWEIW DLHGGFNLQS  60
DEDLYFFTKL KKKSQNGSRI NRSVGTGTWM GEDSGKPIYS RLSAIQPLGF KRRFRYEGGV  120
PQQVGQWIMH EYSLNTTLVP ENDQGYVLCR VRKNDREEKK AEKRRKLIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151166RKNDREEKKAEKRRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984347.11e-124PREDICTED: NAC domain-containing protein 101
TrEMBLA0A061FR051e-123A0A061FR05_THECC; Transcription factor-like protein
STRINGEOY195111e-124(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G12260.19e-20NAC 007
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]