PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG044667t1
Common NameTCM_044667
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 170aa    MW: 19649.5 Da    PI: 9.6673
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG044667t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM73.45.6e-2321342128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.lel.eevikevdiykv.ePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                        +Gf F P+d  l+ +yL  kv++k+ l++ ++ ik++d+y   ePw++      + +++ +++yfF+k +kk+++g+r nr++  g+W    
  Thecc1EG044667t1   2 FVGFGFGPSDRSLM-CYLFSKVTSKSmLHFdQDQIKDFDLYGEkEPWEIWDlyggCNRQSGEDLYFFTKLKKKSQNGSRINRSVGMGTWMGED 93 
                       68************.8999999999963441345******96449**99633455545567799***************************** PP

               NAM  88 kdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       + k+++s+    +    kk L +  g  p+ +  +W+mhey+l
  Thecc1EG044667t1  94 SGKPIYSQlsAIQPLVFKKRLRYE-GGVPH-QVGQWIMHEYSL 134
                       *******8766667999*****97.66666.589*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100525.1241154IPR003441NAC domain
SuperFamilySSF1019411.57E-222153IPR003441NAC domain
PfamPF023651.5E-123134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MFVGFGFGPS DRSLMCYLFS KVTSKSMLHF DQDQIKDFDL YGEKEPWEIW DLYGGCNRQS  60
GEDLYFFTKL KKKSQNGSRI NRSVGMGTWM GEDSGKPIYS QLSAIQPLVF KKRLRYEGGV  120
PHQVGQWIMH EYSLNTVLVP GNDQGYVLCR LRKNDRDEKK AEKRRKLIT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1151166RKNDRDEKKAEKRRKL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984351.11e-111PREDICTED: NAC domain-containing protein 101
TrEMBLA0A061FS951e-123A0A061FS95_THECC; Transcription factor-like protein
STRINGEOY195371e-124(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.17e-21NAC-domain protein 101
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]