PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG044739t1
Common NameTCM_044739
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family NAC
Protein Properties Length: 171aa    MW: 19582.4 Da    PI: 8.6162
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG044739t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM74.23.1e-23111432128
               NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.lel.eevikevdiykv.ePwdLpk.....kvkaeekewyfFskrdkkyatgkrknratksgyWkat 86 
                        +G+rF+P+d  l+  yL  k++gk+ l+l ++vik++d+y   ePw++ +     ++  + +++yfF++++kk++++++ nr + +g+W  t
  Thecc1EG044739t1  11 LVGLRFQPSDAMLL-GYLFSKITGKSrLHLdQQVIKDFDLYGEkEPWEIWElyggdNL-RSGEDLYFFTQSKKKTQNSSKMNRLIGTGTWMIT 101
                       68*********999.8999999999874441357******96449****743344322.245689**************************** PP

               NAM  87 gkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       g  ++++ +  + +  g kk + +  g+  + + ++W+m ey+l
  Thecc1EG044739t1 102 GPAEAITYSqlSAQPLGFKKRFRYK-GEVAQ-QVSQWIMFEYSL 143
                       ******998777888********98.54444.69********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.15E-258163IPR003441NAC domain
PROSITE profilePS5100525.8810163IPR003441NAC domain
PfamPF023652.8E-1312143IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MEDNNAVAPL LVGLRFQPSD AMLLGYLFSK ITGKSRLHLD QQVIKDFDLY GEKEPWEIWE  60
LYGGDNLRSG EDLYFFTQSK KKTQNSSKMN RLIGTGTWMI TGPAEAITYS QLSAQPLGFK  120
KRFRYKGEVA QQVSQWIMFE YSLDTNLVSK NDCNYVLCQL KKKDLKEEKG *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_017984359.11e-122PREDICTED: NAC domain-containing protein 101
TrEMBLA0A061FQK31e-123A0A061FQK3_THECC; Uncharacterized protein
STRINGEOY195951e-124(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62380.17e-16NAC-domain protein 101
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]