PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG045117t1

Common Name

TCM_045117

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

SRS

Protein Properties

Length: 274aa MW: 29124.2 Da PI: 8.2479

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG045117t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	187.9	3.8e-58	74	233	6	153
DUF702 6 asCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa.....aeaaskrkrel......kskkqsals 87 + C+dCGn+akk+C ++RCRtCCksrg+dCathv+stWvpaa+r++r+ ++ kr+r l +s++++a++ Thecc1EG045117t1 74 KVCRDCGNRAKKECGYSRCRTCCKSRGYDCATHVRSTWVPAARRKDRKVVVLGDDDGGGGGGgssgsSSCGGKRPRVLnstsngTSSSNAASK 166 57*******************************************8877666555443334444455556777766444433344444444 PP DUF702 88 stklssaeskkeletss.lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGle 153 s + + ++s++ + +++ lP +v+++avfrc++v++++dge+e+aYq++v+i+GhvfkG+LydqG++ Thecc1EG045117t1 167 SLNFEAGTSQQDSRFKEsLPGQVRAPAVFRCIQVTAISDGEAEIAYQATVNISGHVFKGFLYDQGVD 233 455555555554444336*********************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
TIGRFAMs	TIGR01623	4.0E-26	75	117	IPR006510	Zinc finger, lateral root primordium type 1
Pfam	PF05142	2.8E-55	75	233	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01624	1.6E-28	185	232	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 274 aa Download sequence Send to blast
MLGLHNIFLI APPPSQQNQQ QPTPPPPPQA FNQDCNLSDT NFWTLRKSTT QESPVCQKKD 60 GVLHSVEDGD GCFKVCRDCG NRAKKECGYS RCRTCCKSRG YDCATHVRST WVPAARRKDR 120 KVVVLGDDDG GGGGGGSSGS SSCGGKRPRV LNSTSNGTSS SNAASKSLNF EAGTSQQDSR 180 FKESLPGQVR APAVFRCIQV TAISDGEAEI AYQATVNISG HVFKGFLYDQ GVDVKNAFPC 240 ISKVLFESSS SGRDRDSSSP NVDPPNTFAA SGD*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007010968.1	0.0	PREDICTED: protein SHI RELATED SEQUENCE 6
Swissprot	Q94CK9	9e-54	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A061FSB0	0.0	A0A061FSB0_THECC; Lateral root primordium protein-related, putative
STRING	EOY19778	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM11959	23	32

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.2	3e-50	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Thecc1EG045117t1
Entrez Gene	18587207

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]