PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045524t1
Common NameTCM_045524
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bZIP
Protein Properties Length: 374aa    MW: 40477 Da    PI: 6.3553
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045524t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_132.61.8e-10164209550
                       CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
            bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                       kr++r + NR +A rs +RK  +i eLe+kv++L++e ++L  +l 
  Thecc1EG045524t1 164 KRAKRIIANRQSAARSKERKARYISELERKVQTLQTEATTLSAQLT 209
                       9****************************************98775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003382.3E-16160224IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.599162225IPR004827Basic-leucine zipper domain
PfamPF001704.4E-9164212IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1705.5E-11164215No hitNo description
SuperFamilySSF579597.74E-11164215No hitNo description
CDDcd147031.47E-24165214No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MPDPPSLSPN PDQPIHSNAS STTQTTPSFA NPTTFRGSYH RRAQSEVQFR IPDDLDLVSD  60
PFEGLGSEDD LFCSYMDIEK LGGSSKGADE GGAAGSSSAG SGQNPKGGEE TSGGSGMGEK  120
STGGGKGRHR YSNSVDGCSM MESIEAKKAM APDKLAELWT VDPKRAKRII ANRQSAARSK  180
ERKARYISEL ERKVQTLQTE ATTLSAQLTL FQRDTTGLST ENTELKLRLQ AMEQQAQLRD  240
GMFCPNQLAL NEALKKEVER LKIATGEMTT PTDTFNLGMH HIPYTQSSYF PPQPQHVQVD  300
THNIQMPQFH PFQSNMLTPN QSVVAASNSH AYADMMQQDP LGRLQGLDIS SRGSRLVKSE  360
GPSISAGEHG GTL*
Functional Description ? help Back to Top
Source Description
UniProtTranscrition factor that may participate with bZIP34 in the gametophytic control of pollen development. {ECO:0000269|PubMed:27896439}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00303DAPTransfer from AT2G40620Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007011315.20.0PREDICTED: transcription factor RF2b isoform X1
SwissprotO228731e-119BZP18_ARATH; bZIP transcription factor 18
TrEMBLA0A061FS350.0A0A061FS35_THECC; Basic-leucine zipper transcription factor family protein isoform 1
STRINGEOY201250.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM40422757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40620.11e-115bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]
  3. Pawar V, et al.
    A novel family of plant nuclear envelope-associated proteins.
    J. Exp. Bot., 2016. 67(19): p. 5699-5710
    [PMID:27630107]
  4. Gibalová A, et al.
    Characterization of pollen-expressed bZIP protein interactions and the role of ATbZIP18 in the male gametophyte.
    Plant Reprod, 2017. 30(1): p. 1-17
    [PMID:27896439]
  5. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]
  6. Babiychuk E,Fuangthong M,Van Montagu M,Inzé D,Kushnir S
    Efficient gene tagging in Arabidopsis thaliana using a gene trap approach.
    Proc. Natl. Acad. Sci. U.S.A., 1997. 94(23): p. 12722-7
    [PMID:9356517]