PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045701t2
Common NameTCM_045701
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 227aa    MW: 24667.5 Da    PI: 7.6706
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045701t2genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.7e-11145192455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Thecc1EG045701t2 145 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 192
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.88E-18139211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.97E-10139196No hitNo description
Gene3DG3DSA:4.10.280.101.1E-18141211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.828141191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-8145192IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10147197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MDPPLINESS FSAANLSSYS LAEIWPFPIN SRSDPNVTTA GRLGVRMGTL GGFGESSGHR  60
DGFGADLSSE DESSKMVSTT SANEFNDSNG KRVKSSTKNE NVISKAEVET SSAAGSKPEQ  120
YGKPTEPPKQ DYIHVRARRG QATDSHSLAE RARREKISER MKILQDLVPG CNKVIGKALV  180
LDEIINYIQS LQRQVEFLSM KLEAVNSRMN MSPSIEGFHS KDGRGI*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007099736.21e-162PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ9LV174e-70BH079_ARATH; Transcription factor bHLH79
TrEMBLS1SI061e-165S1SI06_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 2
STRINGEOY202811e-162(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62610.13e-60bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]