PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG045701t3
Common NameTCM_045701
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family bHLH
Protein Properties Length: 199aa    MW: 21601.2 Da    PI: 4.8747
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG045701t3genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH24.54.8e-0881126655
                       HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
               HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                       +++E  RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  Thecc1EG045701t3  81 SANEFARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 126
                       677888******************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474591.23E-1474145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.14875125IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.0E-581126IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.2E-1481145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.5E-781131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.43E-787130No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MDPPLINESS FSAANLSSYS LAEIWPFPIN SRSDPNVTTA GRLGVRMGTL GGFGESSGHR  60
DGFGADLSSE DESSKMVSTT SANEFARREK ISERMKILQD LVPGCNKVIG KALVLDEIIN  120
YIQSLQRQVE FLSMKLEAVN SRMNMSPSIE GFHSKDLGSQ PYDAAGMIFG AQAAREYAQG  180
SQPEWLQMHV GGNFERAT*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that may regulate jasmonate-regulated genes. {ECO:0000250|UniProtKB:Q69WS3}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007099736.21e-102PREDICTED: transcription factor bHLH79 isoform X1
SwissprotQ84T082e-50BH089_ORYSJ; Transcription factor BHLH089
TrEMBLS1RTK71e-145S1RTK7_THECC; Basic helix-loop-helix DNA-binding superfamily protein isoform 3
STRINGEOY202811e-105(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-53BIG PETAL P
Publications ? help Back to Top
  1. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  2. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]