PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG046144t1

Common Name

TCM_046144

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

Protein Properties

Length: 172aa MW: 20051 Da PI: 8.371

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG046144t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	37.9	3.2e-12	4	97	1	90
EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEE.EEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SS. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWe.vkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgr. 87 f+k lt dv k+ + +p +f+++ +g +++ l ++d sg+ We + + +r+ ++ v+++ W+++v+an+Lk gD ++F+++++ Thecc1EG046144t1 4 FEKYLTEVDVKKQ--MAIPTDFMRHLpyyEGG--RTIFLPVYDVSGNLWEnFGYYIRREGKDyarPVFQGDWRKYVRANNLKPGDKIIFRVEENd 94 7888877777776..8*****777877333..5667999****84677445555555679**********************88764 PP SEE CS B3 88 sef 90 ++ Thecc1EG046144t1 95 ANG 97 555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50863	9.742	2	107	IPR003340	B3 DNA binding domain
SuperFamily	SSF101936	9.81E-14	3	94	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.20E-17	3	89	No hit	No description
Gene3D	G3DSA:2.40.330.10	1.0E-13	3	94	IPR015300	DNA-binding pseudobarrel domain
Pfam	PF02362	3.5E-9	4	96	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 172 aa Download sequence Send to blast
MAHFEKYLTE VDVKKQMAIP TDFMRHLPYY EGGRTIFLPV YDVSGNLWEN FGYYIRREGK 60 DYARPVFQGD WRKYVRANNL KPGDKIIFRV EENDANGAPR YTIAAQRRIF LFEYRFTASE 120 WLIPKSAIKD LSHMISQEVA AIDLYSTSVG LLATTDCFFD FQLTKESPMK M*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021288477.1	2e-56	uncharacterized protein LOC110419711
TrEMBL	S1S485	1e-126	S1S485_THECC; Uncharacterized protein
STRING	EOY20511	1e-127	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM22252	4	5

Link Out ? help Back to Top
Phytozome	Thecc1EG046144t1
Entrez Gene	18507082

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]