PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thecc1EG046193t1
Common NameTCM_046193
Organism
Theobroma cacao
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma
Family B3
Protein Properties Length: 194aa    MW: 22009.1 Da    PI: 9.7704
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thecc1EG046193t1genomeCGDView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B336.77.5e-12782783
                      .-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                B3  7 psdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83
                      + d    ++l++ kkf +e   + +++  +t++de+g  W++k++++ + +  vl++ W +Fv+ n++++gD v ++
  Thecc1EG046193t1  7 TIDGDDINQLTITKKFDAEAFPSAAGGGAMTVKDEQGSLWTFKYKVKLRNK-RVLSGHWVHFVRNNRVRVGDRVAIS 82
                      567778899*******6666444566779***************7644433.489*****************98877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086310.321101IPR003340B3 DNA binding domain
CDDcd100173.17E-12377No hitNo description
Gene3DG3DSA:2.40.330.107.2E-12484IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.34E-11480IPR015300DNA-binding pseudobarrel domain
PfamPF023622.4E-9882IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MAILEKTIDG DDINQLTITK KFDAEAFPSA AGGGAMTVKD EQGSLWTFKY KVKLRNKRVL  60
SGHWVHFVRN NRVRVGDRVA ISNNDGWSSE AEYKIELAAM ARIFEKYLTT QDKDEGLKIR  120
SGADLLPRVN ENLRVMDGKS KKVLVFEYQV SGRETPVIRG KQWKKFISRY NTGDTVTLYT  180
YQGCDAEYEI SVR*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLS1SN061e-141S1SN06_THECC; Uncharacterized protein
STRINGEOY205291e-141(Theobroma cacao)
Publications ? help Back to Top
  1. Motamayor JC, et al.
    The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color.
    Genome Biol., 2013. 14(6): p. r53
    [PMID:23731509]