PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Thecc1EG046875t1

Common Name

TCM_046875

Organism

Theobroma cacao

Taxonomic ID

3641

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma

Family

HB-other

Protein Properties

Length: 390aa MW: 42922.3 Da PI: 7.5856

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Thecc1EG046875t1	genome	CGD	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	19.1	2.2e-06	13	74	6	55
S--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC..........TS-HHHHHHHHHHHHHHH CS Homeobox 6 tftkeqleeLeelFek..nrypsaeereeLAkkl..........gLterqVkvWFqNrRake 55 +ft++++ e+e+ ++ n+ p +e LA+k ++ +qV +WFqNrR+ Thecc1EG046875t1 13 RFTPTEVAEMETILQEhhNQMPVREILVSLAEKFsesadrkgkiVVQFKQVWNWFQNRRYAI 74 69999999**999777999****************9999999*********865 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	5.56E-11	4	76	IPR009057	Homeodomain-like
SMART	SM00389	5.7E-4	7	81	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	3.5E-7	13	80	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.588	13	77	IPR001356	Homeobox domain
CDD	cd00086	3.65E-5	13	75	No hit	No description
Pfam	PF16719	2.7E-42	138	265	IPR032001	SAWADEE domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0003682	Molecular Function	chromatin binding

Sequence ? help Back to Top
Protein Sequence Length: 390 aa Download sequence Send to blast
MGRPPSNGGP AFRFTPTEVA EMETILQEHH NQMPVREILV SLAEKFSESA DRKGKIVVQF 60 KQVWNWFQNR RYAIRAKSSK VPGKLNITSM PRDDVNPVRT VPQPVAATMP PPVTAPMPVA 120 MPASTVPGAG RPMSEHSYME FEAKSSRDGA WYDVSTFLAH RYLDTGDPEV QVRFAGFGPE 180 EDEWVNIRKH VRQRSLPCEA SECVAVLPGD LILCFQEGKD QALYFDAHVL DAQRRRHDVR 240 GCRCRFLVRY DHDQSEEIVP LRKVCRRPET DYRLQQLHAS NDSASTDQQK TSTDPSTANA 300 PKVISSSTET MLKQQNPDAF RTALVAHANV SVAAQTTNPE SKNAGTMTTN ITNPVASNPG 360 ISPSGAVFTT SIAVGTATGG FGQNMQEGI*

Sequence ? help Back to Top

Protein Sequence Length: 390 aa Download sequence Send to blast

MGRPPSNGGP AFRFTPTEVA EMETILQEHH NQMPVREILV SLAEKFSESA DRKGKIVVQF  60
KQVWNWFQNR RYAIRAKSSK VPGKLNITSM PRDDVNPVRT VPQPVAATMP PPVTAPMPVA  120
MPASTVPGAG RPMSEHSYME FEAKSSRDGA WYDVSTFLAH RYLDTGDPEV QVRFAGFGPE  180
EDEWVNIRKH VRQRSLPCEA SECVAVLPGD LILCFQEGKD QALYFDAHVL DAQRRRHDVR  240
GCRCRFLVRY DHDQSEEIVP LRKVCRRPET DYRLQQLHAS NDSASTDQQK TSTDPSTANA  300
PKVISSSTET MLKQQNPDAF RTALVAHANV SVAAQTTNPE SKNAGTMTTN ITNPVASNPG  360
ISPSGAVFTT SIAVGTATGG FGQNMQEGI*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4iuq_A	2e-48	139	269	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuq_B	2e-48	139	269	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iur_A	2e-48	139	269	4	134	SHH1 SAWADEE
4iur_B	2e-48	139	269	4	134	SHH1 SAWADEE
4iut_A	2e-48	139	269	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iut_B	2e-48	139	269	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_A	2e-48	139	269	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuu_B	2e-48	139	269	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_A	2e-48	139	269	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
4iuv_B	2e-48	139	269	4	134	SAWADEE HOMEODOMAIN HOMOLOG 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	May play a role in the recruitment of Pol IV to genomic regions associated with K9 methylated histone H3 that are targets for RdDM.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007021609.1	0.0	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
Refseq	XP_017979998.1	0.0	PREDICTED: protein SAWADEE HOMEODOMAIN HOMOLOG 2
Swissprot	Q8RWJ7	1e-158	SHH2_ARATH; Protein SAWADEE HOMEODOMAIN HOMOLOG 2
TrEMBL	A0A061FF91	0.0	A0A061FF91_THECC; DNA binding protein, putative
STRING	EOY13134	0.0	(Theobroma cacao)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7399	24	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18380.3	1e-137	sequence-specific DNA binding transcription factors;sequence-specific DNA binding

Link Out ? help Back to Top
Phytozome	Thecc1EG046875t1
Entrez Gene	18594093

Publications ? help Back to Top
Motamayor JC, et al. The genome sequence of the most widely cultivated cacao type and its use to identify candidate genes regulating pod color. Genome Biol., 2013. 14(6): p. r53 [PMID:23731509]