PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000010m
Common NameEUTSA_v10000010mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 1487aa    MW: 167775 Da    PI: 9.7833
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000010mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3727.7e-2369164299
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f +l+++++l ++ l+lpk+f++++ +k e+ ++++l+d   rsW + l+++k+ +++++t+GW++F+++ng keg f+vFkl+g ++++++++
  Thhalv10000010m  69 FVALVTASNLHTDALYLPKDFTSSNVLKREC-RKIVLTDGGERSWALDLRFNKSCDSFYITRGWRSFCEENGRKEGGFFVFKLVG-NSETPFLS 160
                      567899999****************988666.6***************************************************9.55559999 PP

                      EE-S CS
               B3  96 vfrk 99 
                      ++++
  Thhalv10000010m 161 FCST 164
                      9986 PP
2B350.15.1e-16202293196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++p  +l+ +r+ +p +f++e++++k++   +tl  ++g +    l+ r +sgr+ ltkGW+eF+kangLk+g++++++ ++ +++++++
  Thhalv10000010m 202 FVTLTLPQCSLRDSRIFIPLPFLRENDLDKPR--LITLLGKDGTKQVADLR-RDGSGRMRLTKGWREFAKANGLKAGESFTLESIW-KDKTPML 291
                      56667788889999*************99655..7********99999994.6677789************************999.7777777 PP

                      EE CS
               B3  95 kv 96 
                      ++
  Thhalv10000010m 292 RL 293
                      66 PP
3B358.71.1e-18363455196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++++d+l+++rl lp +f++++g++k  s ++tl  ++g +W  +l  ++  gr+ l+kGWk+F+ an +k+g+++++k  + +++++++
  Thhalv10000010m 363 FVTLTVTHDSLRNCRLHLPLSFMRKNGLDK--SGMITLLGKDGTKWPANLLRENATGRMSLGKGWKDFAIANSVKAGESFTLKSLW-KDKTPML 453
                      788899***********************6..459***************999******************************777.6666776 PP

                      EE CS
               B3  95 kv 96 
                      ++
  Thhalv10000010m 454 SL 455
                      65 PP
4B3598.4e-19655745498
                      E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
               B3   4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                       ++ +   +++rl+lp +f +e+g++k++  ++ l   +g +W  +l    ++gr++ ++GWk+FvkangLk g++ +++l++ +++++v+ ++
  Thhalv10000010m 655 FTLAPVDVRHCRLRLPMQFSRENGINKPG--KIYLLGNDGSKWLANL-LLESRGRMTVGDGWKSFVKANGLKIGESYTLELKW-EDTTPVLCLC 744
                      5556667899**************99776..8***************.6777788899***********************99.8888999988 PP

                      - CS
               B3  98 r 98 
                       
  Thhalv10000010m 745 P 745
                      6 PP
5B3696.5e-22813906198
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++++d+l++grl++p +f++e+ +++++  ++tl  ++g +W v l    ++gr+ l+kGWk+F+kangLk+gD+++++ ++ +++++v+
  Thhalv10000010m 813 FLTLTITPDSLRHGRLRIPLQFMRENRMNTPG--DITLLGKDGAKWLVSLL-LERRGRMSLGKGWKDFAKANGLKTGDSITLESIW-EDATPVL 902
                      778899********************999666..7***************5.55556789***********************999.8888998 PP

                      EEE- CS
               B3  95 kvfr 98 
                      +++r
  Thhalv10000010m 903 SLLR 906
                      8876 PP
6B347.82.6e-1510951161877
                       -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT CS
               B3    8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkeg 77  
                       + + +++rl+lp +f++e+g++k++  ++ l  ++g +W  +l  + ++gr++l++GWk+Fv angLk+ 
  Thhalv10000010m 1095 PVNVRNCRLRLPMQFTRENGINKPG--KIYLLGKDGSKWLANL-LQESRGRMTLGDGWKSFVTANGLKTE 1161
                       556789**************99776..8***************.7999999****************986 PP
7B368.59e-2212291322198
                       EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3    1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92  
                       f++ ++++d+l++grl+lp +f++e+++++++  ++tl  ++g +W v l    ++gr+ l+kGWk+F+kangLk+gD+++++ ++ +++++
  Thhalv10000010m 1229 FLTLTITPDSLRHGRLRLPLQFMRENSMNTPG--DITLLGKDGAKWLVSLL-LERRGRMSLGKGWKDFAKANGLKTGDSITLESIW-EDATP 1316
                       778899********************999666..7***************5.55556789***********************999.88889 PP

                       EEEEE- CS
               B3   93 vvkvfr 98  
                       v++++r
  Thhalv10000010m 1317 VLSLLR 1322
                       988876 PP
8B353.44.8e-1713891477598
                       -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3    5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96  
                       ltp+dv + + l lp +f++++g+ k++  ++t+  +sg +W  +l    ++g++ l++GWk+F++ang+ +g++ +++++ r+++  v+k+
  Thhalv10000010m 1389 LTPEDV-RDCKLHLPSQFMRTNGITKPG--KITMLGRSGMKWFAYL--LSNDGAVALGNGWKGFCEANGVMVGESYILEYIPREDTDHVFKF 1475
                       555555.5677***********999766..8***************..9********************************88999889999 PP

                       E- CS
               B3   97 fr 98  
                       ++
  Thhalv10000010m 1476 CS 1477
                       87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.4E-2261164IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.42E-2264164IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086315.2768164IPR003340B3 DNA binding domain
CDDcd100172.37E-1968163No hitNo description
SMARTSM010196.6E-2969165IPR003340B3 DNA binding domain
PfamPF023623.0E-2169164IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.1E-15196291IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-18200295IPR015300DNA-binding pseudobarrel domain
CDDcd100172.80E-14201293No hitNo description
SMARTSM010193.3E-22202297IPR003340B3 DNA binding domain
PfamPF023627.1E-15202293IPR003340B3 DNA binding domain
PROSITE profilePS5086313.296202297IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-19353458IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-22359457IPR015300DNA-binding pseudobarrel domain
CDDcd100178.46E-19363455No hitNo description
SMARTSM010192.5E-30363459IPR003340B3 DNA binding domain
PfamPF023624.7E-18363455IPR003340B3 DNA binding domain
PROSITE profilePS5086314.198363459IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.102.4E-21646746IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-21648747IPR015300DNA-binding pseudobarrel domain
CDDcd100174.92E-16650745No hitNo description
SMARTSM010198.2E-29652747IPR003340B3 DNA binding domain
PfamPF023628.8E-19652745IPR003340B3 DNA binding domain
PROSITE profilePS5086314.424652747IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.9E-21803904IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-23809904IPR015300DNA-binding pseudobarrel domain
SMARTSM010194.9E-33813908IPR003340B3 DNA binding domain
PfamPF023621.6E-21813906IPR003340B3 DNA binding domain
CDDcd100171.36E-19813906No hitNo description
PROSITE profilePS5086316.088813908IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-1610821161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-1510851162IPR015300DNA-binding pseudobarrel domain
SMARTSM010193.2E-1110881175IPR003340B3 DNA binding domain
PROSITE profilePS5086311.50510881187IPR003340B3 DNA binding domain
PfamPF023625.9E-1410931162IPR003340B3 DNA binding domain
CDDcd100171.83E-1110981160No hitNo description
Gene3DG3DSA:2.40.330.103.6E-2112201320IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.31E-2212251320IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-3312291324IPR003340B3 DNA binding domain
PfamPF023622.4E-2112291322IPR003340B3 DNA binding domain
PROSITE profilePS5086316.05912291324IPR003340B3 DNA binding domain
CDDcd100172.42E-1912291322No hitNo description
Gene3DG3DSA:2.40.330.101.4E-1813781478IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.16E-1913801478IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-1413831476No hitNo description
SMARTSM010192.2E-1813841479IPR003340B3 DNA binding domain
PROSITE profilePS5086312.61913841478IPR003340B3 DNA binding domain
PfamPF023622.2E-1513891477IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1487 aa     Download sequence    Send to blast
MVLHLSDLGP SSNNDQDKMG YISMKKHQHP RSEDYGGDDD NTELARKKKA KMNKSEAEAD  60
SSSSDHSCFV ALVTASNLHT DALYLPKDFT SSNVLKRECR KIVLTDGGER SWALDLRFNK  120
SCDSFYITRG WRSFCEENGR KEGGFFVFKL VGNSETPFLS FCSTESFNDG TNKNSKESCM  180
ELERKKNHLR CIDSTSPIEN RFVTLTLPQC SLRDSRIFIP LPFLRENDLD KPRLITLLGK  240
DGTKQVADLR RDGSGRMRLT KGWREFAKAN GLKAGESFTL ESIWKDKTPM LRLVHTDSSS  300
DGRQQRQCYS KASEKESVST ESRREKASKK VSPLSSGKQI SKEERKKNHL RFRDSPSPSQ  360
NPFVTLTVTH DSLRNCRLHL PLSFMRKNGL DKSGMITLLG KDGTKWPANL LRENATGRMS  420
LGKGWKDFAI ANSVKAGESF TLKSLWKDKT PMLSLVHTDS SSDGRQQGQC YSKASEKESV  480
STEPSGENKT QGAKNNREEK RHSSSGIGNQ FVTLTLKPED VRDCKLNKSW ASYEVRRIQR  540
FPHRSRTHCR LKIVRCDAHD LRIRKVVVFL RHGRRYDVPE FTRKKKTKKN NPETEAFSTS  600
DHSCFEAHVS ATNCLDFRLQ DSTSSDAIRK KCDKKYSSRR MVKSYESSEK RFVTFTLAPV  660
DVRHCRLRLP MQFSRENGIN KPGKIYLLGN DGSKWLANLL LESRGRMTVG DGWKSFVKAN  720
GLKIGESYTL ELKWEDTTPV LCLCPEEYSM YRGAGGCSEA SEKESLLIQP SSGNEIMTIE  780
NIDENRKEES SSWEKEKNHL RRSDSTSTSQ NRFLTLTITP DSLRHGRLRI PLQFMRENRM  840
NTPGDITLLG KDGAKWLVSL LLERRGRMSL GKGWKDFAKA NGLKTGDSIT LESIWEDATP  900
VLSLLRIEPN SDGRQQGEYS IAREKETIFT ELSSGESRKY PLGRLDSSLA IQSTVSPEIG  960
VSHHLRIGEI AVFRHEGDMM FQVSDFGPSC CEIRDVLTPI RNHYQENIEL PRKKKVKLNN  1020
PGTEAVFSSD RSCFVAHVTA SNLHTNALPL PQEPLPQDFS SSDGHNRKCP KNSPTQIISS  1080
YSSNEKHLAT FTLAPVNVRN CRLRLPMQFT RENGINKPGK IYLLGKDGSK WLANLLQESR  1140
GRMTLGDGWK SFVTANGLKT EYSIDSREEG GCPEAREKEP LPIKPSSGKE ISISYNNEDE  1200
NSKEESTSWE REKNQLISSN SSSPSQNRFL TLTITPDSLR HGRLRLPLQF MRENSMNTPG  1260
DITLLGKDGA KWLVSLLLER RGRMSLGKGW KDFAKANGLK TGDSITLESI WEDATPVLSL  1320
LRIEASNDRG QSEFSKLSLS TGRSSGNKTR KAENNREGSS SGEFEKSKDL LRRVHSSLAI  1380
QNRIVMLTLT PEDVRDCKLH LPSQFMRTNG ITKPGKITML GRSGMKWFAY LLSNDGAVAL  1440
GNGWKGFCEA NGVMVGESYI LEYIPREDTD HVFKFCSNFG DQIHNW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000010m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014111.10.0B3 domain-containing protein REM-like 1 isoform X3
SwissprotQ8S8E80.0REML1_ARATH; B3 domain-containing protein REM-like 1
TrEMBLV4LVD40.0V4LVD4_EUTSA; Uncharacterized protein
STRINGXP_006405009.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM150791619
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24690.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]