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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | Thhalv10000130m | ||||||||
| Common Name | EUTSA_v10000130mg | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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| Family | B3 | ||||||||
| Protein Properties | Length: 516aa MW: 59005.6 Da PI: 9.1727 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 44.3 | 3.3e-14 | 21 | 94 | 10 | 89 |
HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
++++ l +p f+ +h g+ +++kt +l++ s +W+vk+ ++++ l+ GW++F+ a++L+ gD+vvF+++g+
Thhalv10000130m 21 GFTNH-LDIPVAFFLKHleGS--NKGKTAKLRSdASEITWKVKI--DGRR----LSVGWEDFAVAHDLRIGDIVVFRHEGDLL 94
56666.9**********7544..47779999986888*******..9998....999********************877533 PP
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| 2 | B3 | 71 | 1.5e-22 | 151 | 242 | 2 | 96 |
EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
B3 2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
f v++++++lk++ ++lpk+fae +g++k++ +++l++e+g+sW++ l+++ +sgr+++++GW++F+ ang k gD ++Fkl+++ e+++v++
Thhalv10000130m 151 FEVTVTASNLKRDVVYLPKTFAEVNGLIKKS--EIVLMNEEGESWKIDLRHEDYSGRFYMSRGWRSFCVANGKKPGDDFTFKLVQN-EETPVIQ 241
567889*********************9755..8*************************************************995.5557776 PP
E CS
B3 96 v 96
+
Thhalv10000130m 242 M 242
5 PP
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| 3 | B3 | 64.4 | 1.8e-20 | 282 | 373 | 3 | 97 |
EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
B3 3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96
+ +++++l+++ ++lpkkfa ++g+ k++ ++ l +e+g+sW++ l++ ++gr+ +++GW++F+ an+ k gD++ Fkl++ +++++++++
Thhalv10000130m 282 VAIVTASNLERDTVYLPKKFAVSNGLLKKR--EIDLVNEKGKSWRIDLRHVAYPGRFCMRRGWRSFCIANEKKPGDSFKFKLVQ-NGETPMLQM 372
5678999*****************999655..8*************************************************99.566678776 PP
E CS
B3 97 f 97
f
Thhalv10000130m 373 F 373
6 PP
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| 4 | B3 | 51.5 | 1.8e-16 | 428 | 514 | 11 | 99 |
HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
B3 11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
+ +rl +p +f++e+g+kk++ +t+ d+ g +W+ l ++k++++ + l+++Wk+F++ ng+k +++v++l++ +e+ + +k+++k
Thhalv10000130m 428 TPANRLNFPLQFTKENGIKKAG--RITMLDRYGTRWKTSLLMNKNQRGtMSLGRNWKGFCEINGVKMDESFVLELVW-EERVPILKFCSK 514
55689************99888..5***************99666655599**************************.677799999987 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 6.47E-19 | 10 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
| Gene3D | G3DSA:2.40.330.10 | 5.8E-20 | 10 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 11.166 | 11 | 103 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 4.21E-15 | 12 | 98 | No hit | No description |
| SMART | SM01019 | 8.7E-22 | 14 | 103 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 6.1E-9 | 24 | 92 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 1.3E-22 | 145 | 240 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 6.87E-22 | 147 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
| SMART | SM01019 | 1.2E-31 | 150 | 246 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 5.02E-19 | 150 | 244 | No hit | No description |
| PROSITE profile | PS50863 | 15.834 | 150 | 246 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 9.8E-21 | 151 | 242 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 3.9E-22 | 273 | 370 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 3.14E-21 | 275 | 371 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 14.381 | 280 | 376 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 1.62E-18 | 280 | 374 | No hit | No description |
| SMART | SM01019 | 1.6E-28 | 281 | 376 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 2.4E-19 | 282 | 373 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 7.2E-16 | 415 | 514 | IPR015300 | DNA-binding pseudobarrel domain |
| SuperFamily | SSF101936 | 1.2E-16 | 417 | 514 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 11.293 | 418 | 514 | IPR003340 | B3 DNA binding domain |
| SMART | SM01019 | 1.7E-22 | 422 | 515 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 1.9E-15 | 427 | 514 | IPR003340 | B3 DNA binding domain |
| CDD | cd10017 | 4.49E-11 | 431 | 513 | No hit | No description |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
| GO:0005634 | Cellular Component | nucleus | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 516 aa Download sequence Send to blast |
MANPPLYSPI KPHFFQPLLP GFTNHLDIPV AFFLKHLEGS NKGKTAKLRS DASEITWKVK 60 IDGRRLSVGW EDFAVAHDLR IGDIVVFRHE GDLLFHVTAL GPSCCEIQYG EYSNDEEENM 120 EKKICDTEKV SRKKKKSPKT ETDDATDQSC FEVTVTASNL KRDVVYLPKT FAEVNGLIKK 180 SEIVLMNEEG ESWKIDLRHE DYSGRFYMSR GWRSFCVANG KKPGDDFTFK LVQNEETPVI 240 QMLPLNTEDL HKLDSTMDAE KVPKKKCQKT EADSSPDHSC FVAIVTASNL ERDTVYLPKK 300 FAVSNGLLKK REIDLVNEKG KSWRIDLRHV AYPGRFCMRR GWRSFCIANE KKPGDSFKFK 360 LVQNGETPML QMFPLNMHKL EPSNDTREGL EATSDVIRQG KRSKAIKTTI TEEHSTTSQN 420 RFVTLTFTPA NRLNFPLQFT KENGIKKAGR ITMLDRYGTR WKTSLLMNKN QRGTMSLGRN 480 WKGFCEINGV KMDESFVLEL VWEERVPILK FCSKS* |
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Thhalv10000130m |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_024014114.1 | 0.0 | B3 domain-containing protein REM10 | ||||
| Swissprot | P0DH85 | 0.0 | REM10_ARATH; B3 domain-containing protein REM10 | ||||
| TrEMBL | V4LRL3 | 0.0 | V4LRL3_EUTSA; Uncharacterized protein | ||||
| STRING | XP_006405016.1 | 0.0 | (Eutrema salsugineum) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Malvids | OGEM14490 | 15 | 22 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT2G24700.1 | 0.0 | B3 family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Thhalv10000130m |
| Entrez Gene | 18022331 |
| Publications ? help Back to Top | |||
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