PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000130m
Common NameEUTSA_v10000130mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 516aa    MW: 59005.6 Da    PI: 9.1727
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000130mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B344.33.3e-1421941089
                     HHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
               B3 10 vlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89
                      ++++ l +p  f+ +h  g+  +++kt +l++  s  +W+vk+  ++++    l+ GW++F+ a++L+ gD+vvF+++g+  
  Thhalv10000130m 21 GFTNH-LDIPVAFFLKHleGS--NKGKTAKLRSdASEITWKVKI--DGRR----LSVGWEDFAVAHDLRIGDIVVFRHEGDLL 94
                     56666.9**********7544..47779999986888*******..9998....999********************877533 PP

2B3711.5e-22151242296
                      EEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
               B3   2 fkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                      f v++++++lk++ ++lpk+fae +g++k++  +++l++e+g+sW++ l+++ +sgr+++++GW++F+ ang k gD ++Fkl+++ e+++v++
  Thhalv10000130m 151 FEVTVTASNLKRDVVYLPKTFAEVNGLIKKS--EIVLMNEEGESWKIDLRHEDYSGRFYMSRGWRSFCVANGKKPGDDFTFKLVQN-EETPVIQ 241
                      567889*********************9755..8*************************************************995.5557776 PP

                      E CS
               B3  96 v 96 
                      +
  Thhalv10000130m 242 M 242
                      5 PP

3B364.41.8e-20282373397
                      EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
               B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                       + +++++l+++ ++lpkkfa ++g+ k++  ++ l +e+g+sW++ l++  ++gr+ +++GW++F+ an+ k gD++ Fkl++ +++++++++
  Thhalv10000130m 282 VAIVTASNLERDTVYLPKKFAVSNGLLKKR--EIDLVNEKGKSWRIDLRHVAYPGRFCMRRGWRSFCIANEKKPGDSFKFKLVQ-NGETPMLQM 372
                      5678999*****************999655..8*************************************************99.566678776 PP

                      E CS
               B3  97 f 97 
                      f
  Thhalv10000130m 373 F 373
                      6 PP

4B351.51.8e-164285141199
                      HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
               B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                      +  +rl +p +f++e+g+kk++   +t+ d+ g +W+  l ++k++++ + l+++Wk+F++ ng+k  +++v++l++ +e+ + +k+++k
  Thhalv10000130m 428 TPANRLNFPLQFTKENGIKKAG--RITMLDRYGTRWKTSLLMNKNQRGtMSLGRNWKGFCEINGVKMDESFVLELVW-EERVPILKFCSK 514
                      55689************99888..5***************99666655599**************************.677799999987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019366.47E-1910109IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.8E-2010112IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.16611103IPR003340B3 DNA binding domain
CDDcd100174.21E-151298No hitNo description
SMARTSM010198.7E-2214103IPR003340B3 DNA binding domain
PfamPF023626.1E-92492IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-22145240IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.87E-22147242IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-31150246IPR003340B3 DNA binding domain
CDDcd100175.02E-19150244No hitNo description
PROSITE profilePS5086315.834150246IPR003340B3 DNA binding domain
PfamPF023629.8E-21151242IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.103.9E-22273370IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.14E-21275371IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.381280376IPR003340B3 DNA binding domain
CDDcd100171.62E-18280374No hitNo description
SMARTSM010191.6E-28281376IPR003340B3 DNA binding domain
PfamPF023622.4E-19282373IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.2E-16415514IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.2E-16417514IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.293418514IPR003340B3 DNA binding domain
SMARTSM010191.7E-22422515IPR003340B3 DNA binding domain
PfamPF023621.9E-15427514IPR003340B3 DNA binding domain
CDDcd100174.49E-11431513No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    Send to blast
MANPPLYSPI KPHFFQPLLP GFTNHLDIPV AFFLKHLEGS NKGKTAKLRS DASEITWKVK  60
IDGRRLSVGW EDFAVAHDLR IGDIVVFRHE GDLLFHVTAL GPSCCEIQYG EYSNDEEENM  120
EKKICDTEKV SRKKKKSPKT ETDDATDQSC FEVTVTASNL KRDVVYLPKT FAEVNGLIKK  180
SEIVLMNEEG ESWKIDLRHE DYSGRFYMSR GWRSFCVANG KKPGDDFTFK LVQNEETPVI  240
QMLPLNTEDL HKLDSTMDAE KVPKKKCQKT EADSSPDHSC FVAIVTASNL ERDTVYLPKK  300
FAVSNGLLKK REIDLVNEKG KSWRIDLRHV AYPGRFCMRR GWRSFCIANE KKPGDSFKFK  360
LVQNGETPML QMFPLNMHKL EPSNDTREGL EATSDVIRQG KRSKAIKTTI TEEHSTTSQN  420
RFVTLTFTPA NRLNFPLQFT KENGIKKAGR ITMLDRYGTR WKTSLLMNKN QRGTMSLGRN  480
WKGFCEINGV KMDESFVLEL VWEERVPILK FCSKS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000130m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024014114.10.0B3 domain-containing protein REM10
SwissprotP0DH850.0REM10_ARATH; B3 domain-containing protein REM10
TrEMBLV4LRL30.0V4LRL3_EUTSA; Uncharacterized protein
STRINGXP_006405016.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM144901522
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24700.10.0B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]