PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000279m
Common NameEUTSA_v10000279mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family B3
Protein Properties Length: 282aa    MW: 31388.6 Da    PI: 8.489
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000279mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B354.91.5e-1742136199
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++++d+lks+rl+lp +f++e+g++k++  ++tl   +g +   +l  r +sgr+ l+kG k+F kangLk g++++++l++ +++++v+
  Thhalv10000279m  42 FVTLTLTNDSLKSSRLYLPLQFLKENGMDKPG--MVTLLGNDGTRRLANL-LRESSGRMSLGKGLKDFTKANGLKMGESFTLELIW-ENATPVL 131
                      7788899********************99766..8********9999998.69999******************************.8888999 PP

                      EEE-S CS
               B3  95 kvfrk 99 
                      +++++
  Thhalv10000279m 132 RLLSA 136
                      88775 PP
2B361.81.2e-19144235196
                      EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 
                      f++ ++++d++k++rl lp +f++e+g++  ++ t+ l  ++g +W  +l  r ++gr+ l+kGWk+F++ ngL+ g++++++ ++ +++++++
  Thhalv10000279m 144 FVTLTLTHDSFKNSRLGLPLPFMRENGMN--QPGTIALLGKDGTKWMANL-LRESQGRMSLGKGWKDFARGNGLEIGESFTLESIW-EDATPML 233
                      7788899*******************999..5559***************.6888888*************************999.7887887 PP

                      EE CS
               B3  95 kv 96 
                      ++
  Thhalv10000279m 234 RL 235
                      76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.104.1E-1838133IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.86E-1838133IPR015300DNA-binding pseudobarrel domain
CDDcd100179.08E-1641135No hitNo description
PfamPF023622.7E-1742136IPR003340B3 DNA binding domain
PROSITE profilePS5086311.74442137IPR003340B3 DNA binding domain
SMARTSM010197.4E-2642137IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.106.1E-19137235IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019368.83E-21140235IPR015300DNA-binding pseudobarrel domain
PfamPF023623.7E-19144235IPR003340B3 DNA binding domain
PROSITE profilePS5086314.494144239IPR003340B3 DNA binding domain
SMARTSM010194.8E-28144239IPR003340B3 DNA binding domain
CDDcd100174.53E-19144235No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 282 aa     Download sequence    Send to blast
MKKGETPLLS FWPSESINDG TQADENNRQG CRDLISPNQN RFVTLTLTND SLKSSRLYLP  60
LQFLKENGMD KPGMVTLLGN DGTRRLANLL RESSGRMSLG KGLKDFTKAN GLKMGESFTL  120
ELIWENATPV LRLLSAELRS QNRFVTLTLT HDSFKNSRLG LPLPFMRENG MNQPGTIALL  180
GKDGTKWMAN LLRESQGRMS LGKGWKDFAR GNGLEIGESF TLESIWEDAT PMLRLSGTVS  240
KSDRRLQGEH CCEASEKESV IRELNESNID ERSNSSSLVQ N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000279m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405015.20.0B3 domain-containing protein REM12
SwissprotP0CAP44e-66REM12_ARATH; B3 domain-containing protein REM12
TrEMBLV4M2K00.0V4M2K0_EUTSA; Uncharacterized protein
STRINGXP_006405015.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78281641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24680.12e-68B3 family protein