PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000302m
Common NameEUTSA_v10000302mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family ERF
Protein Properties Length: 244aa    MW: 27854.4 Da    PI: 6.9388
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000302mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.59.2e-2068117255
              AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                       ykGVr+++ +g+WvAeIr p++   r+r +lg+f tae+Aa a+++a+ +l+g
  Thhalv10000302m  68 LYKGVRQRH-WGKWVAEIRLPKN---RTRLWLGTFETAEKAALAYDQAAFQLRG 117
                      59******9.**********965...5************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-2168125IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.8E-3168126IPR001471AP2/ERF domain
PROSITE profilePS5103222.31368125IPR001471AP2/ERF domain
SMARTSM003801.5E-3668131IPR001471AP2/ERF domain
CDDcd000181.74E-3169126No hitNo description
PfamPF008475.9E-1469117IPR001471AP2/ERF domain
PRINTSPR003671.9E-106980IPR001471AP2/ERF domain
PRINTSPR003671.9E-1091107IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
METTSLPNIP KSNTSFGFNQ PKPLGLNQLT PYQIYQIQNQ LNHRRSTMSP NRIQMKKLSP  60
SSSKSQKLYK GVRQRHWGKW VAEIRLPKNR TRLWLGTFET AEKAALAYDQ AAFQLRGDIT  120
KLNFPNIRHE DINPLPSSVD AKLQAICESL RKTEEACSVS DKTEDICSVL DRTELPLPKT  180
EHPETMKSFD KPPRTDENSL SDESQLAFLD FSDYEFDEIG SFWLAKFPSV EIEWDAISKL  240
SDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2167125160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-2167125463ATERF1
3gcc_A3e-2167125463ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000302m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404676.20.0ethylene-responsive transcription factor ERF056
SwissprotQ9SIE41e-126ERF56_ARATH; Ethylene-responsive transcription factor ERF056
TrEMBLV4LQR61e-180V4LQR6_EUTSA; Uncharacterized protein
STRINGXP_006404676.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM26802768
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22200.11e-119ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]