PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000309m
Common NameEUTSA_v10000309mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family bZIP
Protein Properties Length: 238aa    MW: 27165.4 Da    PI: 8.9622
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000309mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1391.8e-12147192348
                      XXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
           bZIP_1   3 elkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkke 48 
                      ++++ +r+++NRe+A+rsR RK+  ie+L+++v  L  eN++Lk++
  Thhalv10000309m 147 DDRKRKRMESNRESAKRSRMRKQRHIENLKDEVNRLGLENRELKNR 192
                      67899**************************************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1708.1E-11142192No hitNo description
SMARTSM003389.0E-16145209IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.645147210IPR004827Basic-leucine zipper domain
PfamPF001702.1E-9148192IPR004827Basic-leucine zipper domain
SuperFamilySSF579593.09E-10149200No hitNo description
CDDcd147027.46E-16150194No hitNo description
PROSITE patternPS000360152167IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MMSTVPAFSF AEPGFINQLS DFQTGFTPWD FDCSDLFSVI KSSLEPVILS PCSGESETGS  60
VRTNTGFHDI KPGSDESCIG SVKTNSGSVK TNSGSIKTNS GSDDSECFDG VPSPQSEELN  120
PENTIIRIKA TDHNRKKLNR PVSQTTDDRK RKRMESNRES AKRSRMRKQR HIENLKDEVN  180
RLGLENRELK NRFRIFLYHI EQISTYNNRL LSEQEILRRR FSEMRQILIL RQLQNQQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1134152RKKLNRPVSQTTDDRKRKR
2161166KRSRMR
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000309m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006404751.11e-175regulatory protein opaque-2
TrEMBLV4LQX51e-174V4LQX5_EUTSA; Uncharacterized protein
STRINGXP_006404751.11e-174(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM78551840
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22850.21e-107basic leucine-zipper 6