PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000419m
Common NameEUTSA_v10000419mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family LBD
Protein Properties Length: 115aa    MW: 12717.6 Da    PI: 5.8892
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000419mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260110.11.6e-3451071101
           DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                      +C+aCkvl+  C+ +Cv+apyfp+++p+kf  vh++FGa+nv k+l++   ++ +re a+++l yeAear++dPv G+vg+ l++++ l++lk+
  Thhalv10000419m   5 PCSACKVLKSVCTGECVFAPYFPSTEPEKFDRVHRIFGAENVYKILSNEtfSPLQREYAVKALSYEAEARIQDPVTGCVGMSLAYEKILNNLKE 98 
                      7*********************************************876569999*************************************** PP

           DUF260  93 elallkeel 101
                      +++++k+e+
  Thhalv10000419m  99 QIVSAKNEI 107
                      ***999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.8484107IPR004883Lateral organ boundaries, LOB
PfamPF031954.7E-335104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 115 aa     Download sequence    Send to blast
MASNPCSACK VLKSVCTGEC VFAPYFPSTE PEKFDRVHRI FGAENVYKIL SNETFSPLQR  60
EYAVKALSYE AEARIQDPVT GCVGMSLAYE KILNNLKEQI VSAKNEIVAT MGSDK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A6e-3221088112LOB family transfactor Ramosa2.1
5ly0_B6e-3221088112LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000419m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405176.12e-80LOB domain-containing protein 35
SwissprotO648361e-37LBD10_ARATH; LOB domain-containing protein 10
SwissprotQ9FFL32e-38LBD35_ARATH; LOB domain-containing protein 35
TrEMBLV4L8A56e-80V4L8A5_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405172.11e-80(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM45251455
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35900.17e-41LOB domain-containing protein 35
Publications ? help Back to Top
  1. Kim MJ,Kim M,Kim J
    Combinatorial interactions between LBD10 and LBD27 are essential for male gametophyte development in Arabidopsis.
    Plant Signal Behav, 2015. 10(8): p. e1044193
    [PMID:26252070]
  2. Kim M,Kim MJ,Pandey S,Kim J
    Expression and Protein Interaction Analyses Reveal Combinatorial Interactions of LBD Transcription Factors During Arabidopsis Pollen Development.
    Plant Cell Physiol., 2016. 57(11): p. 2291-2299
    [PMID:27519310]