PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000420m
Common NameEUTSA_v10000420mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 192aa    MW: 21361.4 Da    PI: 6.4905
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000420mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof98.25.5e-312175559
           zf-Dof  5 alkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknk 59
                      + cprC+s+ntk+ yynny +sqPryfCk+Crr+Wt+GG lr++P+Gg+ + n+
  Thhalv10000420m 21 PRVCPRCNSENTKYGYYNNYRVSQPRYFCKNCRRHWTHGGMLRDIPIGGSGQTNE 75
                     678**********************************************988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-191670IPR003851Zinc finger, Dof-type
PROSITE profilePS5088424.4372276IPR003851Zinc finger, Dof-type
PfamPF027014.6E-282274IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MENSNIFLIA NNQVNEEKPP PRVCPRCNSE NTKYGYYNNY RVSQPRYFCK NCRRHWTHGG  60
MLRDIPIGGS GQTNEFTGSS DSFSTVVPVG NHFGSLPEIH GDMGLPVQSF PPLDCLDFSD  120
GSFYQDYCDV ESNALIGLIN QPIGGHVNNY NNYCINQDAQ NQSCNNNMNM NHNASTSGSR  180
GSSGTDNMNK KK
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000420m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405058.11e-111dof zinc finger protein DOF4.4
SwissprotQ9SUA96e-54DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4LVL91e-140V4LVL9_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405064.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.15e-56Dof-type zinc finger domain-containing protein