PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Thhalv10000425m
Common NameEUTSA_v10000425mg
Organism
Eutrema salsugineum
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
Family Dof
Protein Properties Length: 182aa    MW: 20174.5 Da    PI: 6.6101
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Thhalv10000425mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof104.56e-332077461
           zf-Dof  4 kalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61
                     +   cprC+s+ntkf yynny +sqPry Ck+Crr+Wt+GG+lr++P+Gg+ rk+k+ 
  Thhalv10000425m 20 SPCVCPRCNSDNTKFGYYNNYKVSQPRYICKNCRRHWTHGGTLRDIPIGGSGRKSKRP 77
                     6678***************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088425.7322276IPR003851Zinc finger, Dof-type
PfamPF027013.0E-302276IPR003851Zinc finger, Dof-type
ProDomPD0074781.0E-192376IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MENSNIFAIG NNQVNEEKPS PCVCPRCNSD NTKFGYYNNY KVSQPRYICK NCRRHWTHGG  60
TLRDIPIGGS GRKSKRPKIN QPSVSQVVSV EIQQVNHHQP FLHVQETNEF TGTSDSSSTV  120
VPVGNHFGSL PEIHGDMVLP VQSLPPLDCL DFSDGSFYQD YCDVESNALI GNPLINQPIG  180
GQ
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapThhalv10000425m
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006405062.21e-133dof zinc finger protein DOF4.4
SwissprotQ9SUA95e-70DOF44_ARATH; Dof zinc finger protein DOF4.4
TrEMBLV4L8271e-132V4L827_EUTSA; Uncharacterized protein (Fragment)
STRINGXP_006405062.11e-133(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16021789
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21050.13e-65Dof-type zinc finger domain-containing protein